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AT2G24020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Uncharacterised BCR, YbaB family COG0718
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised BCR, YbaB family COG0718; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0133 (InterPro:IPR004401); BEST Arabidopsis thaliana protein match is: Uncharacterised BCR, YbaB family COG0718 (TAIR:AT4G30620.1); Has 2239 Blast hits to 2239 proteins in 898 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0718eggNOG:ENOG410IW0WEMBL:AC005170EMBL:AY048234EMBL:AY091702EMBL:CP002685EnsemblPlants:AT2G24020
EnsemblPlants:AT2G24020.1EnsemblPlants:AT2G24020.2entrez:816936ExpressionAtlas:O82230Gene3D:3.30.1310.10GeneID:816936Genevisible:O82230
GO:GO:0003677GO:GO:0009507GO:GO:0009535GO:GO:0009570GO:GO:0009941hmmpanther:PTHR33449hmmpanther:PTHR33449:SF1
HOGENOM:HOG000293241IntAct:O82230InterPro:IPR004401KEGG:ath:AT2G24020OMA:SMAATTNPaxDb:O82230Pfam:PF02575
PhylomeDB:O82230PIR:F84631ProteinModelPortal:O82230Proteomes:UP000006548RefSeq:NP_001189586.1RefSeq:NP_565561.1SMR:O82230
STRING:3702.AT2G24020.1SUPFAM:SSF82607TAIR:AT2G24020TIGRfam:TIGR00103TIGRFAMs:TIGR00103UniGene:At.25545UniProt:O82230
Coordinates (TAIR10) chr2:-:10217869..10219269
Molecular Weight (calculated) 19812.70 Da
IEP (calculated) 9.61
GRAVY (calculated) -0.48
Length 182 amino acids
Sequence (TAIR10)
(BLAST)
001: MASMAATTNF TKSMLFPFSH VSGNASLNSQ RRTWPKQYKS KNGYRSLRVN GLFGGGNKDN NSEDGQSKAG IFGNMQNMYE TVKKAQMVVQ VEAVRVQKEL
101: AAAEFDGYCA GELVKVTLSG NQQPIRTDIT EAAMELGSEK LSQLVTEAYK DAHAKSVVAM KERMSDLAQS LGMPPGLSEG MK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)