AT2G22660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.912 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (duplicated DUF1399) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (duplicated DUF1399); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT4G37900.1); Has 421 Blast hits to 378 proteins in 86 species: Archae - 0; Bacteria - 30; Metazoa - 19; Fungi - 243; Plants - 113; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:9627737..9629957 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66487.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.34 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||
| Length | 586 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDKEKDHEVE WLEAQKIEIS VDLLAAAKQH LLFLETVDRN RWLYDGPALE KAIYRYNACW LPLLVKYSES SSVSEGSLVP PLDCEWIWHC HRLNPVRYNS 101: DCEQFYGRVL DNSGVLSSVD GNCKLKTEDL WKRLYPDEPY ELDLDNIDLE DISEKSSALE KCTKYDLVSA VKRQSPFYYQ VSRSHVNSDI FLQEAVARYK 201: GFLYLIKMNR ERSLKRFCVP TYDVDLIWHT HQLHPVSYCD DMVKLIGKVL EHDDTDSDRG KGKKLDTGFS KTTAQWEETF GTRYWKAGAM HRGKTPVPVT 301: NSPYASDVLV KDPTAKDDFQ NLIQFPEVEV VEVLLEIIGV RNLPDGHKGK VSVMFSKTQP DSLFNAERRL TILSEVGEKQ VATFQCEPTG ELVFKLISCS 401: PSKIPVSREP KNLGFASLSL KEFLFPVITQ LSVEKWLELT PSKGSQTDTK PISLRVAVSF TPPVRSPSVL HMVQSRPSCK GSCFFPIIGK SRLAKSSTHI 501: VDETQTEVIT LQIRNSADGG ILKDDQRQVM GVTDSGETRV LAVYTGSFWS LLDSKWSLKQ INASTADNPL FEILGPRVVY STILFQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)