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AT2G22250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : aspartate aminotransferase
Curator
Summary (TAIR10)
Encodes a prokaryotic-type plastidic aspartate aminotransferase with glutamate/aspartate-prephenate aminotransferase (PAT) activity.
Computational
Description (TAIR10)
aspartate aminotransferase (AAT); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT1G77670.1); Has 49853 Blast hits to 49849 proteins in 3081 species: Archae - 1094; Bacteria - 34200; Metazoa - 783; Fungi - 895; Plants - 1391; Viruses - 0; Other Eukaryotes - 11490 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT2G22250EnsemblPlants:AT2G22250.1entrez:816758gramene_pathway:2.6.1.79gramene_pathway:PWY-3461gramene_pathway:PWY-3462gramene_plant_reactome:1119281
gramene_plant_reactome:1119389gramene_plant_reactome:1119393gramene_plant_reactome:1119553gramene_plant_reactome:6875076gramene_plant_reactome:6875770gramene_plant_reactome:6877422gramene_plant_reactome:6877655
hmmpanther:PTHR11751hmmpanther:PTHR11751:SF379Pfam:PF00155scanprosite:PS00105tair10-symbols:AATtair10-symbols:ATAATtair10-symbols:MEE17
Coordinates (TAIR10) chr2:-:9458011..9460028
Molecular Weight (calculated) 46041.50 Da
IEP (calculated) 6.53
GRAVY (calculated) 0.08
Length 428 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSRICAMAK PNDAETLSSS VDMSLSPRVQ SLKPSKTMVI TDLAATLVQS GVPVIRLAAG EPDFDTPKVV AEAGINAIRE GFTRYTLNAG ITELREAICR
101: KLKEENGLSY APDQILVSNG AKQSLLQAVL AVCSPGDEVI IPAPYWVSYT EQARLADATP VVIPTKISNN FLLDPKDLES KLTEKSRLLI LCSPSNPTGS
201: VYPKSLLEEI ARIIAKHPRL LVLSDEIYEH IIYAPATHTS FASLPDMYER TLTVNGFSKA FAMTGWRLGY LAGPKHIVAA CSKLQGQVSS GASSIAQKAG
301: VAALGLGKAG GETVAEMVKA YRERRDFLVK SLGDIKGVKI SEPQGAFYLF IDFSAYYGSE AEGFGLINDS SSLALYFLDK FQVAMVPGDA FGDDSCIRIS
401: YATSLDVLQA AVEKIRKALE PLRATVSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)