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AT2G20560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAJ heat shock family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G28480.1); Has 27936 Blast hits to 27733 proteins in 3449 species: Archae - 187; Bacteria - 10270; Metazoa - 4781; Fungi - 2609; Plants - 2869; Viruses - 17; Other Eukaryotes - 7203 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0714EMBL:AC007109EMBL:AY057555EMBL:AY086509EMBL:AY133644EMBL:CP002685
EnsemblPlants:AT2G20560EnsemblPlants:AT2G20560.1entrez:816578Gene3D:1.10.287.110GeneID:816578GO:GO:0006457Gramene:AT2G20560.1
hmmpanther:PTHR24078hmmpanther:PTHR24078:SF188HOGENOM:HOG000226718InterPro:IPR001623InterPro:IPR002939InterPro:IPR008971InterPro:IPR018253
KEGG:ath:AT2G20560KO:K09510OMA:ATYFSTGPfam:PF00226Pfam:PF01556Pfscan:PS50076PhylomeDB:Q9SIL3
PIR:G84590PRINTS:PR00625PROSITE:PS00636PROSITE:PS50076Proteomes:UP000006548Reactome:R-ATH-3371453Reactome:R-ATH-3371568
Reactome:R-ATH-3371571Reactome:R-ATH-5687128RefSeq:NP_179646.1scanprosite:PS00636SMART:SM00271SMR:Q9SIL3STRING:3702.AT2G20560.1
SUPFAM:SSF46565SUPFAM:SSF49493TAIR:AT2G20560UniGene:At.26315UniProt:Q9SIL3
Coordinates (TAIR10) chr2:-:8848353..8849815
Molecular Weight (calculated) 37111.20 Da
IEP (calculated) 9.29
GRAVY (calculated) -0.60
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVDYYKVLQ VDRSASDDDL KKAYRKLAMK WHPDKNPNNK KDAEAMFKQI SEAYEVLSDP QKKAVYDQYG EEGLKGNVPP PDAGGATYFS TGDGPTSFRF
101: NPRNADDIFA EFFGFSSPFG GGRGGTRFSS SMFGDNMFAS FGEGGGGGGG SMHHGGARKA APIENKLPCS LEDLYKGTTK KMRISREIAD VSGKTMQVEE
201: ILTIDVKPGW KKGTKITFPE KGNEQPGVIP ADLVFIIDEK PHPVFTREGN DLIVTQKISL VEALTGYTVN LTTLDGRRLT IPVTNVVHPE YEEVVPKEGM
301: PLQKDQTKRG NLRIKFNIKF PTRLTSEQKT GVKKLLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)