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AT2G19310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G07400.1); Has 749 Blast hits to 749 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 34; Plants - 701; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0071eggNOG:KOG0710EMBL:AC003058EMBL:AF325068
EMBL:AY063873EMBL:AY088926EMBL:AY117326EMBL:CP002685
EnsemblPlants:AT2G19310EnsemblPlants:AT2G19310.1entrez:816448Gene3D:2.60.40.790
GeneID:816448Genevisible:O64564GO:GO:0005737GO:GO:0006979
GO:GO:0009408GO:GO:0009644GO:GO:0042542Gramene:AT2G19310.1
hmmpanther:PTHR11527hmmpanther:PTHR11527:SF132HOGENOM:HOG000251751InParanoid:O64564
InterPro:IPR008978InterPro:IPR031107KEGG:ath:AT2G19310OMA:FELMNTF
PANTHER:PTHR11527PaxDb:O64564Pfam:O64564PhylomeDB:O64564
PIR:T01279PRO:PR:O64564ProteinModelPortal:O64564Proteomes:UP000006548
RefSeq:NP_179521.1SMR:O64564STRING:3702.AT2G19310.1SUPFAM:SSF49764
TAIR:AT2G19310UniGene:At.22229UniProt:O64564
Coordinates (TAIR10) chr2:-:8369892..8370380
Molecular Weight (calculated) 18529.70 Da
IEP (calculated) 4.16
GRAVY (calculated) -0.36
Length 162 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMIPISNRR RLSPGDRIWE PFELMNTFLD FPSPALFLSH HFPSLSREIF PQTSSSTVNT QLNWTETPTA HVFKAYLPGV DQDEVIAFVD EEGYLQICTG
101: DNKFMSRFKL PNNALTDQVT AWMEDEFLVV FVEKDASSSP PQLPEIEENR NVRVVEITGD DD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)