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AT2G17630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, transaminase activity, catalytic activity, O-phospho-L-serine:2-oxoglutarate aminotransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Aminotransferase class-V pyridoxal-phosphate binding site (InterPro:IPR020578), Phosphoserine aminotransferase, subgroup (InterPro:IPR003248), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Phosphoserine aminotransferase (InterPro:IPR022278); BEST Arabidopsis thaliana protein match is: phosphoserine aminotransferase (TAIR:AT4G35630.1); Has 5143 Blast hits to 5141 proteins in 1794 species: Archae - 74; Bacteria - 3425; Metazoa - 166; Fungi - 141; Plants - 61; Viruses - 0; Other Eukaryotes - 1276 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G17630-MONOMERBioGrid:1627EC:2.6.1.52eggNOG:COG1932eggNOG:KOG2790EMBL:AC007509EMBL:AK228962
EMBL:BT023418EMBL:BT025981EMBL:CP002685EnsemblPlants:AT2G17630EnsemblPlants:AT2G17630.1entrez:816270Gene3D:3.40.640.10
Gene3D:3.90.1150.10GeneID:816270Genevisible:Q9SHP0GO:GO:0004648GO:GO:0006564GO:GO:0009507GO:GO:0009534
GO:GO:0009570GO:GO:0046686Gramene:AT2G17630.1gramene_pathway:2.6.1.52gramene_pathway:SERSYN-PWYHAMAP:MF_00160hmmpanther:PTHR21152
hmmpanther:PTHR21152:SF1HOGENOM:HOG000088965InParanoid:Q9SHP0InterPro:IPR000192InterPro:IPR015421InterPro:IPR015422InterPro:IPR015424
InterPro:IPR020578InterPro:IPR022278iPTMnet:Q9SHP0KEGG:00260+2.6.1.52KEGG:00680+2.6.1.52KEGG:00750+2.6.1.52KEGG:ath:AT2G17630
KO:K00831OMA:PVWIERRPaxDb:Q9SHP0Pfam:PF00266Pfam:Q9SHP0PhylomeDB:Q9SHP0PIR:E84554
PIRSF:PIRSF000525PRIDE:Q9SHP0PRO:PR:Q9SHP0PROSITE:PS00595ProteinModelPortal:Q9SHP0Proteomes:UP000006548Reactome:R-ATH-977347
RefSeq:NP_179354.1scanprosite:PS00595SMR:Q9SHP0STRING:3702.AT2G17630.1SUPFAM:SSF53383TAIR:AT2G17630TIGRfam:TIGR01364
TIGRFAMs:TIGR01364UniGene:At.11051UniGene:At.40118UniPathway:UPA00135unipathway:UPA00244UniProt:Q9SHP0
Coordinates (TAIR10) chr2:+:7666637..7667905
Molecular Weight (calculated) 46636.10 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.22
Length 422 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASTNSFLI GNQTQIPSLK PKSISQSFIH FTKPNTINLT TRTKSVSIRC ASASTTVGSE QRVINFAAGP AALPENVLLK AQSDLYNWRG SGMSVMEMSH
101: RGKEFLSIIQ KAESDLRQLL EIPSEYSVLF LQGGATTQFA ALPLNLCKSD DSVDYIVTGS WGDKAFKEAK KYCNPKVIWS GKSEKYTKVP TFDGLEQSSD
201: AKYLHICANE TIHGVEFKDY PLVENPDGVL IADMSSNFCS KPVDVSKFGV IYAGAQKNVG PSGVTIVIIR KDLIGNARDI TPVMLDYKIH DENSSLYNTP
301: PCFGIYMCGL VFDDLLEQGG LKEVEKKNQR KAELLYNAID ESRGFFRCPV EKSVRSLMNV PFTLEKSELE AEFIKEAAKE KMVQLKGHRS VGGMRASIYN
401: AMPLAGVEKL VAFMKDFQAR HA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)