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AT2G15050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lipid transfer protein
Curator
Summary (TAIR10)
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
Computational
Description (TAIR10)
lipid transfer protein (LTP); FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 1 (TAIR:AT2G38540.1); Has 1097 Blast hits to 1096 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1093; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
EMBL:AC005957EMBL:AF325066EMBL:AK175803EMBL:AK220655
EMBL:BT024565EMBL:CP002685EnsemblPlants:AT2G15050EnsemblPlants:AT2G15050.1
entrez:815994GeneID:815994Genevisible:Q9ZUK6GO:GO:0006869
GO:GO:0008289hmmpanther:PTHR33076hmmpanther:PTHR33076:SF20HOGENOM:HOG000237659
InParanoid:Q9ZUK6InterPro:IPR000528InterPro:IPR016140KEGG:ath:AT2G15050
OMA:QACRCIKPaxDb:Q9ZUK6Pfam:PF00234Pfam:Q9ZUK6
PhylomeDB:Q9ZUK6PIR:D84524PRIDE:Q9ZUK6PRINTS:PR00382
PRO:PR:Q9ZUK6ProteinModelPortal:Q9ZUK6Proteomes:UP000006548RefSeq:NP_001118321.1
RefSeq:NP_179109.1RefSeq:NP_973466.1SMART:SM00499SMR:Q9ZUK6
STRING:3702.AT2G15050.1SUPFAM:SSF47699TAIR:AT2G15050tair10-symbols:LTP
tair10-symbols:LTP7UniGene:At.13389UniProt:Q9ZUK6
Coordinates (TAIR10) chr2:+:6518888..6519259
Molecular Weight (calculated) 12996.20 Da
IEP (calculated) 10.01
GRAVY (calculated) 0.12
Length 123 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGLMKLGCL VFVFVIAAGP ITAKAALSCG EVNSNLKPCT GYLTNGGITS PGPQCCNGVR KLNGMVLTTL DRRQACRCIK NAARNVGPGL NADRAAGIPR
101: RCGIKIPYST QIRFNTKCNT YIC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)