AT2G13440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glucose-inhibited division family A protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
glucose-inhibited division family A protein; FUNCTIONS IN: FAD binding; INVOLVED IN: tRNA processing, tRNA wobble uridine modification; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-inhibited division protein A-related (InterPro:IPR002218), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Glucose-inhibited division protein A (InterPro:IPR004416), Glucose-inhibited division protein A-related, conserved site (InterPro:IPR020595); Has 12829 Blast hits to 12787 proteins in 2525 species: Archae - 2; Bacteria - 6632; Metazoa - 144; Fungi - 175; Plants - 52; Viruses - 0; Other Eukaryotes - 5824 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:5593270..5598296 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80761.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.08 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 723 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRAAAAATAT VSLRHFRSFP TIVPSLLFSS SSSIPFHSPR LCVFLRPRQL FLNRPLAASF SSSSSGATSD STYDVIVVGA GHAGCEAALA SARLGASTLL 101: LTLNLDRIAW QPCNPAVGGP AKSQLVHEVD ALGGDIGKVA DRCYLQKRIL NVSRGPAVRS LRAQTDKREY ATEMKKIVDS TENLCIREAM VTDIIVGKND 201: NVEGVATFFG MNFYAPSVIL TTGTFMSGKI WVGKKSMPAG RAGESASQGL TENLQKLGFE TDRLKTGTPA RVDRRTIDFS NLEAQHGDEE VSWFSFDPDF 301: HIEREQMCCY LTRTTKITHQ LIRDNLHETP TYGGWVEAKG PRYCPSIEDK IVRFKDKESH QIFLEPEGRD VPEIYVQGFS TGLPENLQLP LLRSLPGLEN 401: CSMLRPAYAV EYDYLPAHQC SRSLMTKKIE GLFFSGQING TTGYEEAAAQ GIISGINAAR HADGKKHVVL ERESSYIGTL IDDLVTKDLR EPYRMLTSRS 501: EHRLLLRFDN ADSRLTPLGR ELGLIDDRRW KLYQEKQARI SEEKKRLKTV KISVAVGDLA AEVSSVSSQP VKESATLESL LKKPHIHYKL LEKHGFGNET 601: LSRMEKDCVE IDIKYEGFIV RQQNQLQQMV HQQHRRLPDD LDYYSMTTLS HEGREKLSKV RPETIGQASR VGGVSPADIT ALLITLESNR RRTQDVKRGK 701: ILEHALAESN PQWVEDREHV VNE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)