AT1G79190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.962 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 200 Blast hits to 184 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 76; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:29788639..29794116 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 148207.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.38 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||
| Length | 1335 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDKSVVIRRE TNGDDVEGDP EREAVFAQLK VLCLELLNLS QNPEKDPTTI PALLLLLRRT PPSSLQSFFH YTLFPLLLLL DAAVACRSQG QNKPEEFPQT 0101: PYRVSDKVAE GVISCLEELL KKCHIGSIDQ MVVIMKKLTS GAVLSPSEAS EEFREGIVKC FRAMISGLLP CSDDSCSCKR TVGWPQLSDR RDYQTQVSES 0201: YKYDFETREC LLAFLQSQSA LAAVGHWLSI LLKVADAEAS RGHRGSANLR VEAFMALRIL VAKIGTADVL AFFLPGVVSQ VFKVLHVSRA MISGAAGSVD 0301: ALDQAIRGLA EFLMIVLEDE ANSSALEISN GDTKSQKHES AHSILDELRS LTTKSQGQSD ELTEITNQEI VNINVPEKSN LNLSRDSFLV ERTKKWLDST 0401: TSHVNKLLCE TFPHILIHPA GKIRWGFLAA IRGLLSKSSC SLKGARLVML ECVCTLAVDD SDEVSVAAQE FLDHLFSEST KNHVESDIKK IFSRLLERLP 0501: KVVLGNEELP ALSVVKQLLV ITYYSGPQFL ADHLQSPITA SRFLDIFSLC LSHNSAFTGS LEKLIAERPS SSTGYLPSIT ELKVGFRETR YNRAVPNITE 0601: TDQVKLEISS PSSHMLPRMP PWFSYVGSQK LYEMLAGILR LVGLSLMAGF KNEGHLAVIL DIPLGFVRKL VSEVRVKEYN GEDWQSWCNR TGSGQLVRQA 0701: ATAACILNEM IFGLSDQATD ALSRLLQKSR KGRDKLSWEI SWNKRAKTNL IECVGKILHE YQASEVWDLP VDQKAILGQT DNDGQHISLH FLRDSAMLHQ 0801: VIIEGVGVFS LCLGKDFASS GFLHSSLYLL LESLTCSSFQ VRNASDTVLR LLAATSGHPT VGHLVVANAD YVIDSICRQL RHLDLNPHVP NVLAAMLSYI 0901: GVAHDILPLL EEPMRLVSQE LEIVGRQQHP NLTIPFLKAV GEIVNASKNE ACLLPDRAKS YSDHVKTKAT DAITSRQERV SNSDKIVEDE EEWENILLEL 1001: NRSKRYRRTV GSIASSCLIA ATPLLASSNQ VSCLVSLEII EEGVVALAKV EEAYRAETET KETIEEVIEF ASFYQLKDYM NASDDGADEN RLLPAINKIW 1101: PFCVACIRNR NPVAVRRCLV VITRIIQTSG GDFFSRRFRN DGPDFWKLLT TSPFHIMTPK ILREDNKSVL RLPYRTISES SSSTIAEVSS LKVQAAVLDM 1201: IAEISRGKRS ASALDAVLKK VAGLVVGIAY SSVTGLREAA LNALRGLACI DPDLIWILLA DVYYSLKKKD LPLPPSPEFP DISNVLPSRP PEDSRTKFLY 1301: VEYGGRSYGF ELEFSSVEIV FKKMQSLVFV DQMRC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)