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AT1G78630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:14729914 (2004): plastid
  • PMID:11826309 (2002): plastid
FP Images

Arabidopsis cell culture (plastidal marker)

At1g78630-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L13 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1473 (emb1473); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: thylakoid, ribosome, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT3G01790.2); Has 8725 Blast hits to 8725 proteins in 2839 species: Archae - 248; Bacteria - 5258; Metazoa - 358; Fungi - 293; Plants - 251; Viruses - 0; Other Eukaryotes - 2317 (source: NCBI BLink).
Protein Annotations
BioGrid:29418eggNOG:COG0102eggNOG:KOG3203EMBL:AC007260EMBL:AF370318EMBL:AY063105EMBL:CP002684
EMBL:X87333EnsemblPlants:AT1G78630EnsemblPlants:AT1G78630.1entrez:844199Gene3D:3.90.1180.10GeneID:844199Genevisible:Q9SYL9
GO:GO:0003729GO:GO:0003735GO:GO:0006412GO:GO:0009507GO:GO:0009570GO:GO:0009579GO:GO:0009735
GO:GO:0009941GO:GO:0022625Gramene:AT1G78630.1HAMAP:MF_01366hmmpanther:PTHR11545hmmpanther:PTHR11545:SF7HOGENOM:HOG000225286
InParanoid:Q9SYL9InterPro:IPR005822InterPro:IPR005823InterPro:IPR023563InterPro:IPR023564KEGG:ath:AT1G78630KO:K02871
OMA:DKRIQKTPANTHER:PTHR11545PaxDb:Q9SYL9Pfam:PF00572Pfam:Q9SYL9PhylomeDB:Q9SYL9PIR:A96815
PRIDE:Q9SYL9PRO:PR:Q9SYL9PROSITE:PS00783ProteinModelPortal:Q9SYL9Proteomes:UP000006548RefSeq:NP_177984.1scanprosite:PS00783
SMR:Q9SYL9STRING:3702.AT1G78630.1SUPFAM:SSF52161TAIR:AT1G78630tair10-symbols:emb1473TIGRfam:TIGR01066TIGRFAMs:TIGR01066
UniGene:At.20962UniProt:Q9SYL9
Coordinates (TAIR10) chr1:+:29575997..29577406
Molecular Weight (calculated) 26790.20 Da
IEP (calculated) 10.57
GRAVY (calculated) -0.47
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVLCSSSTV ILSSSSVKSS GSERKSPFLG FSLTAISKPS VRVGIYANSK RGLQVKCEAE PTTTTSLVPA NQRWMFDEEE ANGPDIWNTT WYPKASDHVN
101: TDKPWFVVDA TDKILGRLAS TIANHIRGKN LASYTPSVDM GAFVIVVNAE KVAVSGKKRN QKLYRRHSGR PGGMTVETFD QLQQRIPERI VEHAVRGMLP
201: KGRLGRALFN HLKVYKGPDH PHEAQKPLDL PIRDKRIQLQ K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)