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AT1G75330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ornithine carbamoyltransferase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ornithine carbamoyltransferase (OTC); FUNCTIONS IN: amino acid binding, ornithine carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity; INVOLVED IN: cellular amino acid metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding (InterPro:IPR006132), Aspartate/ornithine carbamoyltransferase (InterPro:IPR006130), Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain (InterPro:IPR006131), Ornithine carbamoyltransferase (InterPro:IPR002292); BEST Arabidopsis thaliana protein match is: PYRIMIDINE B (TAIR:AT3G20330.1); Has 16793 Blast hits to 16793 proteins in 2905 species: Archae - 534; Bacteria - 11079; Metazoa - 203; Fungi - 280; Plants - 150; Viruses - 6; Other Eukaryotes - 4541 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT1G75330-MONOMERBioGrid:29088EC:2.1.3.3eggNOG:COG0078eggNOG:KOG1504EMBL:AC023754EMBL:AF370270
EMBL:AJ000476EMBL:AJ002524EMBL:AY063030EMBL:CP002684EnsemblPlants:AT1G75330EnsemblPlants:AT1G75330.1entrez:843869
Gene3D:3.40.50.1370GeneID:843869Genevisible:O50039GO:GO:0000050GO:GO:0004585GO:GO:0009507GO:GO:0009570
GO:GO:0016597GO:GO:0042450Gramene:AT1G75330.1gramene_pathway:2.1.3.3gramene_pathway:ARGSYN-PWYgramene_pathway:ARGSYNBSUB-PWYgramene_pathway:CITRULBIO-PWY
gramene_pathway:CITRULLINE-DEG-PWYgramene_pathway:PWY-4981gramene_pathway:PWY-4984gramene_plant_reactome:1119263gramene_plant_reactome:1119318gramene_plant_reactome:1119444gramene_plant_reactome:1119495
gramene_plant_reactome:1119622gramene_plant_reactome:6874427gramene_plant_reactome:6874620gramene_plant_reactome:6877155gramene_plant_reactome:6877156gramene_plant_reactome:6877637HAMAP:MF_01109
hmmpanther:PTHR11405HOGENOM:HOG000022686InParanoid:O50039InterPro:IPR002292InterPro:IPR006130InterPro:IPR006131InterPro:IPR006132
InterPro:IPR024904KEGG:00220+2.1.3.3KEGG:ath:AT1G75330KO:K00611MINT:MINT-8068346OMA:GNNMAHSPaxDb:O50039
Pfam:O50039Pfam:PF00185Pfam:PF02729PhylomeDB:O50039PIR:G96783PIR:T51617PRIDE:O50039
PRINTS:PR00100PRINTS:PR00102PRO:PR:O50039ProteinModelPortal:O50039Proteomes:UP000006548Reactome:R-ATH-70635RefSeq:NP_177667.1
SMR:O50039STRING:3702.AT1G75330.1SUPFAM:SSF53671TAIR:AT1G75330tair10-symbols:OTCTIGRfam:TIGR00658TIGRFAMs:TIGR00658
UniGene:At.545UniGene:At.66903UniProt:O50039
Coordinates (TAIR10) chr1:-:28266457..28268383
Molecular Weight (calculated) 41004.30 Da
IEP (calculated) 7.64
GRAVY (calculated) -0.10
Length 375 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAMASHVS TARSPALSFS SSSSSFFPGT TLRRFSAVSL PSPALPRLRV SCQASSVTSP SSPSDVKGKS DLKDFLAIDD FDTATIKTIL DKASEVKALL
101: KSGERNYLPF KGKSMSMIFA KPSMRTRVSF ETGFFLLGGH ALYLGPNDIQ MGKREETRDV ARVLSRYNDI IMARVFAHQD ILDLANYSSV PVVNGLTDHN
201: HPCQIMADAL TMIEHIGQVE GTKVVYVGDG NNMVHSWLEL ASVIPFHFVC ACPKGYEPDK ERVSKAKQAG LSKIEITNDP KEAVIGADVV YSDVWASMGQ
301: KDEAEARRKA FQGFQVDEAL MKLAGQKAYF MHCLPAERGV EVTNGVVEAP YSIVFPQAEN RMHAQNAIML HLLGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)