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AT1G74970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ribosomal protein S9
Curator
Summary (TAIR10)
ribosomal protein S9, nuclear encoded component of the chloroplast ribosome
Computational
Description (TAIR10)
ribosomal protein S9 (RPS9); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S9, conserved site (InterPro:IPR020574); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G49080.1); Has 7998 Blast hits to 7997 proteins in 2816 species: Archae - 205; Bacteria - 5347; Metazoa - 103; Fungi - 127; Plants - 149; Viruses - 0; Other Eukaryotes - 2067 (source: NCBI BLink).
Protein Annotations
BioGrid:29055eggNOG:COG0103eggNOG:KOG1697EMBL:AB022676EMBL:AC008263EMBL:AF344318EMBL:AY045600
EMBL:AY045856EMBL:AY086419EMBL:AY091382EMBL:CP002684EnsemblPlants:AT1G74970EnsemblPlants:AT1G74970.1entrez:843836
ExpressionAtlas:Q9XJ27Gene3D:3.30.230.10GeneID:843836Genevisible:Q9XJ27GO:GO:0000312GO:GO:0000462GO:GO:0003735
GO:GO:0006412GO:GO:0009507GO:GO:0009570GO:GO:0009941GO:GO:0016020GO:GO:0019843Gramene:AT1G74970.1
HAMAP:MF_00532_Bhmmpanther:PTHR21569hmmpanther:PTHR21569:SF2HOGENOM:HOG000019802InParanoid:Q9XJ27InterPro:IPR000754InterPro:IPR014721
InterPro:IPR020568InterPro:IPR020574InterPro:IPR023035KEGG:ath:AT1G74970KO:K02996OMA:TISFPRAPANTHER:PTHR21569
PaxDb:Q9XJ27Pfam:PF00380Pfam:Q9XJ27PhylomeDB:Q9XJ27PIR:T52450PRIDE:Q9XJ27PRO:PR:Q9XJ27
PROSITE:PS00360ProteinModelPortal:Q9XJ27Proteomes:UP000006548RefSeq:NP_177635.1scanprosite:PS00360SMR:Q9XJ27STRING:3702.AT1G74970.1
SUPFAM:SSF54211TAIR:AT1G74970tair10-symbols:RPS9tair10-symbols:TWN3UniGene:At.384UniGene:At.74895UniProt:Q681W6
UniProt:Q9XJ27
Coordinates (TAIR10) chr1:-:28157761..28159202
Molecular Weight (calculated) 22578.50 Da
IEP (calculated) 11.12
GRAVY (calculated) -0.23
Length 208 amino acids
Sequence (TAIR10)
(BLAST)
001: MASITNLASS LSSLSFSSQV SQRPNTISFP RANSVFALPA KSARRASLSI TATVSAPPEE EEIVELKKYV KSRLPGGFAA QKIIGTGRRK CAIARVVLQE
101: GTGKVIINYR DAKEYLQGNP LWLQYVKVPL VTLGYENSYD IFVKAHGGGL SGQAQAITLG VARALLKVSA DHRSPLKKEG LLTRDARVVE RKKAGLKKAR
201: KAPQFSKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)