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AT1G74960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : fatty acid biosynthesis 1
Curator
Summary (TAIR10)
Encodes a plastidic beta-ketoacyl-ACP synthase II, involved in fatty acid elongation from 16:0-ACP to 18:0-ACP. Homozygous knock-out mutants are embryo lethal, indicating early embryo development is sensitive to elevated 16:0.
Computational
Description (TAIR10)
fatty acid biosynthesis 1 (FAB1); FUNCTIONS IN: 3-oxoacyl-[acyl-carrier-protein] synthase activity, fatty acid synthase activity; INVOLVED IN: fatty acid biosynthetic process, unsaturated fatty acid biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta-ketoacyl synthase (InterPro:IPR000794), Thiolase-like (InterPro:IPR016039), Beta-ketoacyl synthase, C-terminal (InterPro:IPR014031), 3-oxoacyl-[acyl-carrier-protein] synthase 2 (InterPro:IPR017568), Beta-ketoacyl synthase, N-terminal (InterPro:IPR014030), Thiolase-like, subgroup (InterPro:IPR016038), Beta-ketoacyl synthase, active site (InterPro:IPR018201); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-acyl carrier protein synthase I (TAIR:AT5G46290.1); Has 31012 Blast hits to 28002 proteins in 3663 species: Archae - 7; Bacteria - 21780; Metazoa - 495; Fungi - 2498; Plants - 402; Viruses - 1; Other Eukaryotes - 5829 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G74960-MONOMERBioCyc:ARA:GQT-1583-MONOMERBioCyc:ARA:GQT-1593-MONOMERBioCyc:ARA:MONOMER-14118BioCyc:MetaCyc:MONOMER-14118BioGrid:29054BRENDA:2.3.1.179
EC:2.3.1.41eggNOG:COG0304eggNOG:KOG1394EMBL:AC008263EMBL:AC013258EMBL:AF318307EMBL:AF412045
EMBL:AF419598EMBL:AY054196EMBL:AY081285EMBL:AY097344EMBL:CP002684EnsemblPlants:AT1G74960EnsemblPlants:AT1G74960.1
EnsemblPlants:AT1G74960.2EnsemblPlants:AT1G74960.3entrez:843835Gene3D:3.40.47.10GeneID:843835Genevisible:Q9C9P4GO:GO:0004315
GO:GO:0006633GO:GO:0006636GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0009631GO:GO:0009793
Gramene:AT1G74960.1Gramene:AT1G74960.2Gramene:AT1G74960.3gramene_pathway:2.3.1.41gramene_pathway:FASYN-ELONG-PWYgramene_pathway:PWY-5971gramene_pathway:PWY-5989
hmmpanther:PTHR11712hmmpanther:PTHR11712:SF287HOGENOM:HOG000060166InParanoid:Q9C9P4InterPro:IPR014030InterPro:IPR014031InterPro:IPR016039
InterPro:IPR017568InterPro:IPR018201InterPro:IPR020841KEGG:ath:AT1G74960KO:K09458OMA:FEVEQYLPaxDb:Q9C9P4
Pfam:PF00109Pfam:PF02801Pfam:Q9C9P4PhylomeDB:Q9C9P4PIR:D96779PRIDE:Q9C9P4PRO:PR:Q9C9P4
PROSITE:PS00606ProteinModelPortal:Q9C9P4Proteomes:UP000006548RefSeq:NP_001185400.1RefSeq:NP_565097.1RefSeq:NP_849888.1scanprosite:PS00606
SMART:SM00825SMR:Q9C9P4STRING:3702.AT1G74960.1SUPFAM:SSF53901TAIR:AT1G74960tair10-symbols:ATKAS2tair10-symbols:FAB1
tair10-symbols:KAS2TIGRfam:TIGR03150TIGRFAMs:TIGR03150UniGene:At.26097UniProt:Q9C9P4
Coordinates (TAIR10) chr1:-:28152564..28155948
Molecular Weight (calculated) 57602.90 Da
IEP (calculated) 7.93
GRAVY (calculated) -0.10
Length 541 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGASSSYAS PLCTWFVAAC MSVSHGGGDS RQAVALQSGG RSRRRRQLSK CSVASGSASI QALVTSCLDF GPCTHYNNNN ALSSLFGSNS VSLNRNQRRL
101: NRAASSGGAM AVMEMEKEAA VNKKPPTEQR RVVVTGMGVE TSLGHDPHTF YENLLQGNSG ISQIENFDCS EFPTRIAGEI KSFSTEGWVA PKLSKRMDKF
201: MLYLLTAGKK ALADGGVTDE VMAEFDKTKC GVLIGSAMGG MKVFYDAIEA LRISYKKMNP FCVPFATTNM GSAMLAMDLG WMGPNYSIST ACATSNFCIL
301: NSANHIIKGE ADVMLCGGSD AVIIPIGLGG FVACRALSQR NNDPTKASRP WDTNRDGFVM GEGAGVLLLE ELEHAKKRGA TIYAEFLGGS FTCDAYHMTE
401: PHPDGAGVIL CIERALASAG ISKEQINYIN AHATSTHAGD IKEYQALAHC FGQNPELKVN STKSMIGHLL GAAGAVEAVA TVQAIRTGWV HPNINLENPD
501: SGVDTKLLVG PKKERLDIKA ALSNSFGFGG HNSSIIFAPY K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)