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AT1G72160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Sec14p-like phosphatidylinositol transfer family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G09160.1); Has 4473 Blast hits to 3903 proteins in 364 species: Archae - 35; Bacteria - 264; Metazoa - 1504; Fungi - 917; Plants - 883; Viruses - 13; Other Eukaryotes - 857 (source: NCBI BLink).
Protein Annotations
BioGrid:28767eggNOG:ENOG410XRSQeggNOG:KOG1471EMBL:AC067754EMBL:AK221110EMBL:AY048199EMBL:AY133553
EMBL:CP002684EnsemblPlants:AT1G72160EnsemblPlants:AT1G72160.1entrez:843547Gene3D:3.40.525.10GeneID:843547Genevisible:Q56Z59
GO:GO:0005737GO:GO:0005886GO:GO:0006810GO:GO:0007049GO:GO:0008289GO:GO:0016021GO:GO:0051301
Gramene:AT1G72160.1hmmpanther:PTHR23324hmmpanther:PTHR23324:SF48HOGENOM:HOG000238518InParanoid:Q56Z59IntAct:Q56Z59InterPro:IPR001251
InterPro:IPR009038InterPro:IPR011074iPTMnet:Q56Z59KEGG:ath:AT1G72160ncoils:CoilOMA:NTIKWRRPaxDb:Q56Z59
Pfam:PF00650Pfam:PF03765Pfam:Q56Z59Pfscan:PS50191Pfscan:PS50866PhylomeDB:Q56Z59PIR:A96745
PRIDE:Q56Z59PRO:PR:Q56Z59PROSITE:PS50191PROSITE:PS50866ProteinModelPortal:Q56Z59Proteomes:UP000006548RefSeq:NP_177361.1
SMART:SM00516SMART:SM01100SMR:Q56Z59STRING:3702.AT1G72160.1SUPFAM:0041713SUPFAM:SSF101576SUPFAM:SSF46938
SUPFAM:SSF52087TAIR:AT1G72160UniGene:At.17888UniProt:Q56Z59
Coordinates (TAIR10) chr1:-:27153823..27155609
Molecular Weight (calculated) 56107.30 Da
IEP (calculated) 4.96
GRAVY (calculated) -0.64
Length 490 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)