AT1G71820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SEC6 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SEC6; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: cytosol, plasma membrane, exocyst; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Exocyst complex component Sec6 (InterPro:IPR010326); Has 534 Blast hits to 527 proteins in 171 species: Archae - 3; Bacteria - 6; Metazoa - 247; Fungi - 146; Plants - 73; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27010022..27016745 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85678.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.51 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 752 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMVEDLGVEA KEAAVREVAK LLPLPELLQS ISSIKADYIA RQQANDAQLS TMVAEQVEQA QAGLESLSSS EKTIYELRDN FISIDKLCQE CQTLIDNHDQ 101: IKLLSNARNN LNKTLKDVEG MMSISVEAAA ARDSLSDDKE IVNTYERLTA LDGKRRFALA AAGEEVGRLR EYFEDVDRTW ETFEKTLWGH VSNYYKLSKE 201: SPQTLVRALR VVEMQEILDQ QLAEEAAEAE GEGAMASVAN PRRPGKKSTT TSASSKGLAQ QKLKVQGKGY KDKCYEQIRK AVEDRFNRLL TLVFEDLKAA 301: LEEARMIGEE LGDIYDYVAP CFPPRYEIFQ LMVNLYTERF IQMLRLLSDR ANDLTNIEIL KVTGWVVEYQ ENLIALGVDD SLAQVCSESG SMDPLMNAYV 401: ERMQATTKKW YMNILEADKV QPPKKTEEGK LYTPAAVDLF RILGEQVQIV RDNSTDVMLY RIALAIIQVM IDFQAAEKKR VDEPASDIGL EPLCAMINNN 501: LRCYDLAMEL SNSTLEALPQ NYAEQVNFED TCKGFLEVAK EAVHQTVRVI FEDPGVQELL VKLYQKEWCE GQVTEYLVAT FGDYFTDVKM YVEERSFRRF 601: VEACLEETVV VYVDHLLTQK NYIKEETIER MRLDEEVLMD FFREYISASK VESRIRIMSD LRELASAESL DAFTLVYSNI LEHQPDCPAE VVEKLVSLRE 701: GIPRKDTKEV VQECKEIYEN TLVDGNPPKT GFVFPRVKCL TASKGSMWRK LT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)