suba logo
AT1G71000.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.721
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT1G56300.1); Has 22656 Blast hits to 22652 proteins in 3192 species: Archae - 173; Bacteria - 9479; Metazoa - 3801; Fungi - 1926; Plants - 2253; Viruses - 10; Other Eukaryotes - 5014 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0714EMBL:CP002684EnsemblPlants:AT1G71000
EnsemblPlants:AT1G71000.1entrez:843439Gene3D:1.10.287.110GeneID:843439
GO:GO:0005634GO:GO:0005737Gramene:AT1G71000.1hmmpanther:PTHR24078
InParanoid:F4I8D6InterPro:IPR001623InterPro:IPR018253KEGG:ath:AT1G71000
OMA:HPDRWTKPaxDb:F4I8D6Pfam:PF00226Pfscan:PS50076
PRIDE:F4I8D6PRINTS:PR00625PROSITE:PS00636PROSITE:PS50076
ProteinModelPortal:F4I8D6Proteomes:UP000006548RefSeq:NP_177256.4scanprosite:PS00636
SMART:SM00271SMR:F4I8D6STRING:3702.AT1G71000.1SUPFAM:SSF46565
TAIR:AT1G71000UniGene:At.52471UniProt:F4I8D6
Coordinates (TAIR10) chr1:-:26769336..26770111
Molecular Weight (calculated) 19618.70 Da
IEP (calculated) 4.43
GRAVY (calculated) -0.88
Length 165 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGGIRQTYY EILGVAVDSS AEQIRRAYHK LAKIWHPDRW TKDPFRSGEA KRRFQQIQEA YSVLSDERKR SSYDVGLYDS GEDEGYFDFV QEMVSLMSQT
101: KREEKQYSLE ELQTMVDDMV YEFQSEPLFQ NQSMQMNFDL NQTPDWHSQM SLPLSSFEFY SQSSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)