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AT1G69830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha-amylase-like 3
Curator
Summary (TAIR10)
Encodes a plastid-localized α-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms.
Computational
Description (TAIR10)
alpha-amylase-like 3 (AMY3); FUNCTIONS IN: alpha-amylase activity; INVOLVED IN: circadian rhythm, starch catabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047), Alpha-amylase, C-terminal beta-sheet (InterPro:IPR012850); BEST Arabidopsis thaliana protein match is: alpha-amylase-like 2 (TAIR:AT1G76130.1); Has 11240 Blast hits to 11194 proteins in 2094 species: Archae - 95; Bacteria - 8555; Metazoa - 677; Fungi - 729; Plants - 646; Viruses - 0; Other Eukaryotes - 538 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G69830-MONOMERBioGrid:28540CAZy:CBM45CAZy:GH13EC:3.2.1.1eggNOG:COG0366eggNOG:KOG0471
EMBL:AC010675EMBL:AY050398EMBL:BT000643EMBL:CP002684EnsemblPlants:AT1G69830EnsemblPlants:AT1G69830.1entrez:843319
Gene3D:2.60.40.1180Gene3D:3.20.20.80GeneID:843319Genevisible:Q94A41GO:GO:0004556GO:GO:0005509GO:GO:0005983
GO:GO:0009507GO:GO:0009570Gramene:AT1G69830.1gramene_pathway:3.2.1.1gramene_pathway:PWY-842hmmpanther:PTHR10357hmmpanther:PTHR10357:SF171
HOGENOM:HOG000239525InParanoid:Q94A41InterPro:IPR006047InterPro:IPR012850InterPro:IPR013780InterPro:IPR013781InterPro:IPR015902
InterPro:IPR017853iPTMnet:Q94A41KEGG:ath:AT1G69830ncoils:CoilOMA:WEIPAAPPANTHER:PTHR10357PaxDb:Q94A41
Pfam:PF00128Pfam:PF07821Pfam:Q94A41PhylomeDB:Q94A41PIR:E96720PRIDE:Q94A41PRO:PR:Q94A41
ProMEX:Q94A41ProteinModelPortal:Q94A41Proteomes:UP000006548RefSeq:NP_564977.1SMART:SM00642SMART:SM00810SMR:Q94A41
STRING:3702.AT1G69830.1SUPFAM:SSF51011SUPFAM:SSF51445TAIR:AT1G69830tair10-symbols:AMY3tair10-symbols:ATAMY3UniGene:At.24555
UniGene:At.72024UniProt:Q94A41
Coordinates (TAIR10) chr1:-:26288518..26293003
Molecular Weight (calculated) 99847.10 Da
IEP (calculated) 5.96
GRAVY (calculated) -0.55
Length 887 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTVPIESLL HHSYLRHNSK VNRGNRSFIP ISLNLRSHFT SNKLLHSIGK SVGVSSMNKS PVAIRATSSD TAVVETAQSD DVIFKEIFPV QRIEKAEGKI
101: YVRLKEVKEK NWELSVGCSI PGKWILHWGV SYVGDTGSEW DQPPEDMRPP GSIAIKDYAI ETPLKKLSEG DSFFEVAINL NLESSVAALN FVLKDEETGA
201: WYQHKGRDFK VPLVDDVPDN GNLIGAKKGF GALGQLSNIP LKQDKSSAET DSIEERKGLQ EFYEEMPISK RVADDNSVSV TARKCPETSK NIVSIETDLP
301: GDVTVHWGVC KNGTKKWEIP SEPYPEETSL FKNKALRTRL QRKDDGNGSF GLFSLDGKLE GLCFVLKLNE NTWLNYRGED FYVPFLTSSS SPVETEAAQV
401: SKPKRKTDKE VSASGFTKEI ITEIRNLAID ISSHKNQKTN VKEVQENILQ EIEKLAAEAY SIFRSTTPAF SEEGVLEAEA DKPDIKISSG TGSGFEILCQ
501: GFNWESNKSG RWYLELQEKA DELASLGFTV LWLPPPTESV SPEGYMPKDL YNLNSRYGTI DELKDTVKKF HKVGIKVLGD AVLNHRCAHF KNQNGVWNLF
601: GGRLNWDDRA VVADDPHFQG RGNKSSGDNF HAAPNIDHSQ DFVRKDIKEW LCWMMEEVGY DGWRLDFVRG FWGGYVKDYM DASKPYFAVG EYWDSLSYTY
701: GEMDYNQDAH RQRIVDWINA TSGAAGAFDV TTKGILHTAL QKCEYWRLSD PKGKPPGVVG WWPSRAVTFI ENHDTGSTQG HWRFPEGKEM QGYAYILTHP
801: GTPAVFFDHI FSDYHSEIAA LLSLRNRQKL HCRSEVNIDK SERDVYAAII DEKVAMKIGP GHYEPPNGSQ NWSVAVEGRD YKVWETS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)