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AT1G68190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : B-box zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B-box zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 9 (TAIR:AT3G07650.4); Has 1632 Blast hits to 1343 proteins in 109 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 1580; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZIVeggNOG:ENOG4111DUWEMBL:AC016447EMBL:AK117800EMBL:CP002684EnsemblPlants:AT1G68190EnsemblPlants:AT1G68190.1
entrez:843148GeneID:843148Genevisible:Q9C9F4GO:GO:0003700GO:GO:0005634GO:GO:0006355GO:GO:0008270
Gramene:AT1G68190.1hmmpanther:PTHR31717hmmpanther:PTHR31717:SF14HOGENOM:HOG000111890InParanoid:Q9C9F4InterPro:IPR000315KEGG:ath:AT1G68190
OMA:AVVYCIAPaxDb:Q9C9F4Pfam:Q9C9F4Pfscan:PS50119PhylomeDB:Q9C9F4PIR:C96705PRIDE:Q9C9F4
PRO:PR:Q9C9F4PROSITE:PS50119ProteinModelPortal:Q9C9F4Proteomes:UP000006548RefSeq:NP_176986.1SMART:SM00336STRING:3702.AT1G68190.1
TAIR:AT1G68190UniGene:At.35557UniProt:Q9C9F4
Coordinates (TAIR10) chr1:+:25559384..25561004
Molecular Weight (calculated) 40373.50 Da
IEP (calculated) 5.19
GRAVY (calculated) -0.51
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MLCIIIIENM ERVCEFCKAY RAVVYCIADT ANLCLTCDAK VHSANSLSGR HLRTVLCDSC KNQPCVVRCF DHKMFLCHGC NDKFHGGGSS EHRRRDLRCY
101: TGCPPAKDFA VMWGFRVMDD DDDVSLEQSF RMVKPKVQRE GGFILEQILE LEKVQLREEN GSSSLTERGD PSPLELPKKP EEQLIDLPQT GKELVVDFSH
201: LSSSSTLGDS FWECKSPYNK NNQLWHQNIQ DIGVCEDTIC SDDDFQIPDI DLTFRNFEEQ FGADPEPIAD SNNVFFVSSL DKSHEMKTFS SSFNNPIFAP
301: KPASSTISFS SSETDNPYSH SEEVISFCPS LSNNTRQKVI TRLKEKKRAR VEEKKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)