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AT1G65030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: protein binding, nucleotide binding; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); Has 5965 Blast hits to 4406 proteins in 385 species: Archae - 22; Bacteria - 1754; Metazoa - 1570; Fungi - 1477; Plants - 405; Viruses - 0; Other Eukaryotes - 737 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRDQeggNOG:KOG0294EMBL:BT015862EMBL:CP002684
EnsemblPlants:AT1G65030EnsemblPlants:AT1G65030.1entrez:842811Gene3D:2.130.10.10
GeneID:842811GO:GO:0005730GO:GO:0080008Gramene:AT1G65030.1
hmmpanther:PTHR22844HOGENOM:HOG000244178InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017986InterPro:IPR019775KEGG:ath:AT1G65030KO:K14830
OMA:SEFKAHEPfam:PF00400Pfscan:PS50082Pfscan:PS50294
PhylomeDB:Q5XEV4PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294
Proteomes:UP000006548RefSeq:NP_176683.1scanprosite:PS00678SMART:SM00320
SMR:Q5XEV4STRING:3702.AT1G65030.1SUPFAM:SSF50978TAIR:AT1G65030
UniGene:At.43680UniGene:At.74019UniProt:Q5XEV4
Coordinates (TAIR10) chr1:+:24156798..24158511
Molecular Weight (calculated) 37457.40 Da
IEP (calculated) 6.91
GRAVY (calculated) -0.24
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIIAGSYER FIWGFKLKPT KHDAESQTLT LSPLFSYPSH ISPITTVACS GPAAASGGSD DTIHLYDLPS ASSLGSLLDH NHAASITALS FYTPSSLSFP
101: RNLISAAADG SVAIFDTDPF VLLKSFRPHK KAVNDLAIHP SGKLALAVYR DEFFAMLNLV RGKRSFCCRL GHEASLVKFD PSGERFYMVV SNKVGVHQSE
201: DAKLLLELEN PSRKRILCAT PGESGTLFTG GEDRAITAWD TNSGKLAYSI EDAHPARIKG IVVLTRNDSD GSLEDPYLIG SASSDGIIRV WDVRMAAKEN
301: TKPLAETNTK SRLTCLAGSA LKSMRRPQIG KQEPQKVDEE HEDSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)