AT1G64430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); Has 41 Blast hits to 39 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23933541..23936336 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61624.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.80 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||
| Length | 559 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLRVVSSVF SGINRIPNLH ETHTLLRSHV FSFFFKPANI GSIRRLVLSP SYGDRSRDSV GSAADVSSSI LDDELLSSVS AVRDADEALA MISDRFGSNR 101: GGIVELEDCR SIISAAVSRG NVDLALSIFY TMRASFDLGG SDNDRWSWSR PDVEVYTMLV NGLAASLRVS DSLRIIRDIC RVGISPAEEV PFGKIVRCPS 201: CLIAIAVAQP QHGVQIVSCA NCRYQYELFS GDITSIDSEE LGKDIPLWEK GLRLIQIKKN KITSSVHSIV VQTPSGTART HRFATETAEL PAQEGERVTI 301: ASAAPSNVYR QVGPFKFISK APNFYPGEPM SLTKHKDGRE SILLRPPSKD GDKILQPSFL IPLLAILATG DAASGVIDPS LPQLLSVATV TSLAIGATVN 401: SFVLPKLNQL PERTVDVVGI KQQLLSQYDV LQRRIRDLKE AVEKEVWMLA RMCQLENKIL AVGEPAYRTR RTRVKKVRES LENSIKGKID LIDSYARISS 501: MIEIEVEMDS DVLAAEAVNN TENIAQQIEQ IMELENLEEK WKIQAEANDE AERLLSSQP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)