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AT1G63940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:22923678 (2012): mitochondrion
  • PMID:21841088 (2011): mitochondrion
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18433418 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:17137349 (2006): mitochondrion
  • PMID:16923014 (2006): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:12954611 (2003): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : monodehydroascorbate reductase 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
monodehydroascorbate reductase 6 (MDAR6); FUNCTIONS IN: ATP binding; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: mitochondrion, stromule, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: monodehydroascorbate reductase 1 (TAIR:AT3G52880.1); Has 32682 Blast hits to 32615 proteins in 3080 species: Archae - 745; Bacteria - 25586; Metazoa - 997; Fungi - 665; Plants - 640; Viruses - 0; Other Eukaryotes - 4049 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0446eggNOG:KOG1336EMBL:AK317254EnsemblPlants:AT1G63940EnsemblPlants:AT1G63940.1entrez:842697ExpressionAtlas:B9DGR6
Gene3D:3.50.50.60GeneID:842697GO:GO:0016491Gramene:AT1G63940.1hmmpanther:PTHR22912hmmpanther:PTHR22912:SF97HOGENOM:HOG000276711
InterPro:IPR023753KEGG:ath:AT1G63940KO:K08232ncoils:CoilPaxDb:B9DGR6Pfam:PF07992PRIDE:B9DGR6
ProteinModelPortal:B9DGR6RefSeq:NP_564818.1STRING:3702.AT1G63940.2SUPFAM:SSF51905TAIR:AT1G63940tair10-symbols:MDAR6UniGene:At.24374
UniGene:At.72711UniProt:B9DGR6
Coordinates (TAIR10) chr1:+:23730206..23733534
Molecular Weight (calculated) 52504.70 Da
IEP (calculated) 7.53
GRAVY (calculated) -0.10
Length 486 amino acids
Sequence (TAIR10)
(BLAST)
001: MALASTTLPT KSGLSLWCPS SPSLARRFPA RFSPIGSRIA SRSLVTASFA NENREFVIVG GGNAAGYAAR TFVENGMADG RLCIVTKEAY APYERPALTK
101: AYLFPPEKKP ARLPGFHTCV GGGGERQTPD WYKEKGIEVI YEDPVAGADF EKQTLTTDAG KQLKYGSLII ATGCTASRFP DKIGGHLPGV HYIREVADAD
201: SLIASLGKAK KIVIVGGGYI GMEVAAAAVA WNLDTTIVFP EDQLLQRLFT PSLAQKYEEL YRQNGVKFVK GASINNLEAG SDGRVSAVKL ADGSTIEADT
301: VVIGIGAKPA IGPFETLAMN KSIGGIQVDG LFRTSTPGIF AIGDVAAFPL KIYDRMTRVE HVDHARRSAQ HCVKSLLTAH TDTYDYLPYF YSRVFEYEGS
401: PRKVWWQFFG DNVGETVEVG NFDPKIATFW IESGRLKGVL VESGSPEEFQ LLPKLARSQP LVDKAKLASA SSVEEALEIA QAALQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)