suba logo
AT1G55490.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25740923 (2015): plastid
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23851315 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:17317660 (2007): plasma membrane
  • PMID:16923014 (2006): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : chaperonin 60 beta
Curator
Summary (TAIR10)
encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.
Computational
Description (TAIR10)
chaperonin 60 beta (CPN60B); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, systemic acquired resistance, cell death, response to cold, chaperone mediated protein folding requiring cofactor; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G13470.1); Has 34209 Blast hits to 34175 proteins in 8723 species: Archae - 804; Bacteria - 21846; Metazoa - 1741; Fungi - 1612; Plants - 841; Viruses - 2; Other Eukaryotes - 7363 (source: NCBI BLink).
Protein Annotations
BioGrid:27221eggNOG:COG0459eggNOG:KOG0356EMBL:AC005223EMBL:AF386945EMBL:AK316889EMBL:AK317612
EMBL:AY081501EMBL:CP002684EMBL:M35598EnsemblPlants:AT1G55490EnsemblPlants:AT1G55490.1EnsemblPlants:AT1G55490.2entrez:841996
Gene3D:1.10.560.10Gene3D:3.50.7.10GeneID:841996Genevisible:P21240GO:GO:0005524GO:GO:0005886GO:GO:0008219
GO:GO:0009409GO:GO:0009507GO:GO:0009570GO:GO:0009627GO:GO:0009941GO:GO:0010319GO:GO:0016020
GO:GO:0022626GO:GO:0042026GO:GO:0048046GO:GO:0051085Gramene:AT1G55490.1Gramene:AT1G55490.2HAMAP:MF_00600
hmmpanther:PTHR11353hmmpanther:PTHR11353:SF8HOGENOM:HOG000076290InParanoid:P21240IntAct:P21240InterPro:IPR001844InterPro:IPR002423
InterPro:IPR018370InterPro:IPR027409InterPro:IPR027413iPTMnet:P21240KEGG:ath:AT1G55490KO:K04077ncoils:Coil
OMA:MIANNAGPaxDb:P21240Pfam:P21240Pfam:PF00118PhylomeDB:P21240PIR:B96597PIR:JT0901
PIR:PW0008PRIDE:P21240PRINTS:PR00298PRO:PR:P21240PROSITE:PS00296ProteinModelPortal:P21240Proteomes:UP000006548
RefSeq:NP_175945.1RefSeq:NP_849811.1scanprosite:PS00296SMR:P21240STRING:3702.AT1G55490.1SUPFAM:SSF48592SUPFAM:SSF52029
SUPFAM:SSF54849TAIR:AT1G55490tair10-symbols:CPN60Btair10-symbols:LEN1TIGRfam:TIGR02348TIGRFAMs:TIGR02348UniGene:At.19230
UniProt:P21240
Coordinates (TAIR10) chr1:-:20715717..20718673
Molecular Weight (calculated) 63812.80 Da
IEP (calculated) 6.38
GRAVY (calculated) -0.11
Length 600 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)