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AT1G54050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: heat shock protein 17.6A (TAIR:AT5G12030.1); Has 4491 Blast hits to 4491 proteins in 1181 species: Archae - 166; Bacteria - 2520; Metazoa - 2; Fungi - 140; Plants - 1242; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0071eggNOG:KOG0710EMBL:AC006577EMBL:AF348586EMBL:AK119081EMBL:AY088858EMBL:CP002684
EnsemblPlants:AT1G54050EnsemblPlants:AT1G54050.1entrez:841843Gene3D:2.60.40.790GeneID:841843Genevisible:Q9SYG1GO:GO:0005737
GO:GO:0009408GO:GO:0009644GO:GO:0042542Gramene:AT1G54050.1hmmpanther:PTHR11527hmmpanther:PTHR11527:SF106HOGENOM:HOG000251751
InParanoid:Q9SYG1InterPro:IPR002068InterPro:IPR008978InterPro:IPR031107iPTMnet:Q9SYG1KEGG:ath:AT1G54050KO:K13993
OMA:PKEYIFYPANTHER:PTHR11527PaxDb:Q9SYG1Pfam:PF00011Pfam:Q9SYG1Pfscan:PS01031PhylomeDB:Q9SYG1
PIR:B96581PRIDE:Q9SYG1PRO:PR:Q9SYG1PROSITE:PS01031ProteinModelPortal:Q9SYG1Proteomes:UP000006548RefSeq:NP_175807.1
SMR:Q9SYG1STRING:3702.AT1G54050.1SUPFAM:SSF49764TAIR:AT1G54050UniGene:At.11109UniProt:Q9SYG1
Coordinates (TAIR10) chr1:-:20179558..20180122
Molecular Weight (calculated) 17363.90 Da
IEP (calculated) 8.85
GRAVY (calculated) -0.50
Length 155 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAVAINHFF GLPEAIEKLI LPISRSGESN NESRGRGSSN NIPIDILESP KEYIFYLDIP GISKSDIQVT VEEERTLVIK SNGKRKRDDD ESEEGSKYIR
101: LERRLAQNLV KKFRLPEDAD MASVTAKYQE GVLTVVIKKL PPQPPKPKTV QIAVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)