AT1G52870.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (TAIR:AT4G03410.2); Has 410 Blast hits to 410 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 20; Plants - 175; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:19685856..19687310 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 34462.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.82 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.00 | ||||||||||||||||||||||||
| Length | 306 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAASLHTSI SPRSFLPLSK PSLKPHRSQI LLRNKQRNCV SCALIRDEID LIPVQSRDRT DHEEGSVVVM STETAVDGNE SVVVGFSAAT SEGQLSLEGF 101: PSSSSSGADL GDEKRRENEE MEKMIDRTIN ATIVLAAGSY AITKLLTIDH DYWHGWTLFE ILRYAPQHNW IAYEEALKQN PVLAKMVISG VVYSVGDWIA 201: QCYEGKPLFE IDRARTLRSG LVGFTLHGSL SHFYYQFCEE LFPFQDWWVV PVKVAFDQTV WSAIWNSIYF TVLGFLRFES PISIFKELKA TFLPMLTVGS 301: FGHLLI |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)