suba logo
AT1G50730.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.716
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 218 Blast hits to 209 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQR5eggNOG:KOG3682EMBL:CP002684EnsemblPlants:AT1G50730EnsemblPlants:AT1G50730.1entrez:841495GeneID:841495
GO:GO:0005622GO:GO:0008565GO:GO:0016021GO:GO:0030904GO:GO:0042147Gramene:AT1G50730.1hmmpanther:PTHR13673
hmmpanther:PTHR13673:SF0InParanoid:F4I6L0InterPro:IPR005378InterPro:IPR029705iPTMnet:F4I6L0KEGG:ath:AT1G50730OMA:YARCYLC
PANTHER:PTHR13673PANTHER:PTHR13673:SF0PaxDb:F4I6L0Pfam:PF03635PRIDE:F4I6L0ProteinModelPortal:F4I6L0Proteomes:UP000006548
RefSeq:NP_175488.2STRING:3702.AT1G50730.1TAIR:AT1G50730TMHMM:TMhelixUniGene:At.45993UniGene:At.75330UniProt:F4I6L0
Coordinates (TAIR10) chr1:+:18795275..18802098
Molecular Weight (calculated) 103977.00 Da
IEP (calculated) 5.17
GRAVY (calculated) 0.07
Length 923 amino acids
Sequence (TAIR10)
(BLAST)
001: MELEFRRRDY GATHKSQFLP RSQTQKHPLS STLASRDQQA KTVRGRDLHF FDPLRGLDVN ASAEENVEDT CISIEAVTQD LIKEWKSLKR ILMQRFPVSK
101: LLLCFTQSAV ESPSALSHPE ETGSEQTSLE EPAKIISQHE YIAKVHELRD GINSAWQAED RVTSLKLSIK VTKLLMDTTV LRFYPTVFVI VTDMLDMLGD
201: MVWERIKQKA ELDIDGTVIC ALPMISALKQ ERLAITGFAK LVLFENFSLA CKAPSIIIFL ILPTFLCLSI GLSLYAHSYL ELAILPCWRF LINQPMEVLD
301: RLVMMVRGLA DPLTSLYCRL YMVHRMQKFG FCSSGYLIKC IKDIEDVLAP VLVDKEGYSY ITDDKKLLFS LVEPAIEYIM KCLFLTGRQE NNVLGILEEL
401: GFGRNKFQSS YNSSHVSILL HYLLKELPSE LVSSLAMEIL DMIRCSNDCS FSQVLNYRLL GNRLSEGKSQ EGFLSSLIDE VIQAASQYQS LYDYLRIMDA
501: YVDLMLQNKM ENHLDALLDD IVSLARDKFL SEEEQASLQS IILKLLSHFE NLQEVLPLNH FIEILDLMSG TSKSSVNMHL LNMGTRNGCI CDSTTVQLLF
601: EVSQALYDAT DFVNIKDDDN RQTSHLISRF VEMVDYGAEM ERHLLFLAEC REAFNGIHEL KETLVRSSNT LAVKALKAGK KHINFVKSCL AFSEVTIPSI
701: SSPTKHLNLY LETAEVALLG GLISHSDELV MSAVEYLENV VLTDGLKSID IDSMASVICK LCSLLVMIPG NPEKGVMEIL KSIFSATRSS SWATLRVKVK
801: IFCAIMSLLS TLSQDNLPYH SANPEIIGNE LLFFGDSSYK QELVSCTQLV LSELLDAIEQ ESSQISRGNM ALEACNCISS ALVMNEKVKE LCLRLLETAK
901: GCLGANDRYI ESTKKSLQLR YTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)