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AT1G49970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16207701 (2006): plastid
  • PMID:11278690 (2001): plastid
FP Images

Arabidopsis cell culture (plastidal marker)

At1g49970-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CLP protease proteolytic subunit 1
Curator
Summary (TAIR10)
Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
Computational
Description (TAIR10)
CLP protease proteolytic subunit 1 (CLPR1); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT1G09130.2); Has 11692 Blast hits to 11690 proteins in 2932 species: Archae - 0; Bacteria - 7285; Metazoa - 144; Fungi - 71; Plants - 1058; Viruses - 0; Other Eukaryotes - 3134 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G49970-MONOMERBioGrid:26645eggNOG:COG0740eggNOG:KOG0840EMBL:AB022330EMBL:AC015445EMBL:AY045677
EMBL:BT000572EMBL:CP002684EnsemblPlants:AT1G49970EnsemblPlants:AT1G49970.1entrez:841420Gene3D:3.90.226.10GeneID:841420
Genevisible:Q9XJ35GO:GO:0004252GO:GO:0009507GO:GO:0009532GO:GO:0009534GO:GO:0009570GO:GO:0009840
GO:GO:0009941Gramene:AT1G49970.1hmmpanther:PTHR10381hmmpanther:PTHR10381:SF18HOGENOM:HOG000006365IntAct:Q9XJ35InterPro:IPR001907
InterPro:IPR023562InterPro:IPR029045KEGG:ath:AT1G49970KO:K01358OMA:LVAQFMWPANTHER:PTHR10381PaxDb:Q9XJ35
PDB:1R96PDBsum:1R96Pfam:PF00574Pfam:Q9XJ35PhylomeDB:Q9XJ35PIR:T52451PRIDE:Q9XJ35
PRINTS:PR00127PRO:PR:Q9XJ35ProteinModelPortal:Q9XJ35Proteomes:UP000006548RefSeq:NP_564560.1SMR:Q9XJ35STRING:3702.AT1G49970.1
SUPFAM:SSF52096TAIR:AT1G49970tair10-symbols:CLPR1tair10-symbols:NCLPP5tair10-symbols:SVR2UniGene:At.23793UniGene:At.75198
UniProt:Q9XJ35
Coordinates (TAIR10) chr1:-:18501936..18504462
Molecular Weight (calculated) 42629.90 Da
IEP (calculated) 8.84
GRAVY (calculated) -0.44
Length 387 amino acids
Sequence (TAIR10)
(BLAST)
001: MATALVSPLT SQLNHEAVCS KFVLPKSPFM SGSKLFSSNM PCSTVPRRTR RSHCFASAKD MSFDHIPKQF RGDNLKDGVM QNFKNVPQYF YGLNSAQMDM
101: FMTEDSPVRR QAEKVTEESI SSRNNYLNNG GIWSMSGMNA ADARRYSMSV QMYRGGGGGG GSERPRTAPP DLPSLLLDAR ICYLGMPIVP AVTELLVAQF
201: MWLDYDNPTK PIYLYINSPG TQNEKMETVG SETEAYAIAD TISYCKSDVY TINCGMAFGQ AAMLLSLGKK GYRAVQPHSS TKLYLPKVNR SSGAAIDMWI
301: KAKELDANTE YYIELLAKGT GKSKEQINED IKRPKYLQAQ AAIDYGIADK IADSQDSSFE KRDYDGTLAQ RAMRPGGGSP AAPAGLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)