suba logo
AT1G36280.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : L-Aspartase-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
L-Aspartase-like family protein; FUNCTIONS IN: N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity; INVOLVED IN: purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Adenylosuccinate lyase C-terminal/plant (InterPro:IPR013539), L-Aspartase-like (InterPro:IPR008948), Adenylosuccinate lyase (InterPro:IPR004769), Fumarate lyase, conserved site (InterPro:IPR020557), Lyase 1, N-terminal (InterPro:IPR022761), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: L-Aspartase-like family protein (TAIR:AT4G18440.1); Has 11787 Blast hits to 11785 proteins in 2616 species: Archae - 258; Bacteria - 6912; Metazoa - 254; Fungi - 311; Plants - 90; Viruses - 0; Other Eukaryotes - 3962 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G36280-MONOMERBioCyc:ARA:GQT-2290-MONOMEREC:4.3.2.2eggNOG:COG0015eggNOG:KOG2700EMBL:BT002331EMBL:CP002684
EnsemblPlants:AT1G36280EnsemblPlants:AT1G36280.1entrez:840534ExpressionAtlas:Q8GUN7Gene3D:1.10.275.10GeneID:840534GO:GO:0004018
GO:GO:0006189GO:GO:0009570GO:GO:0044208GO:GO:0070626Gramene:AT1G36280.1gramene_pathway:4.3.2.2gramene_pathway:DENOVOPURINE3-PWY
gramene_pathway:PWY-6124gramene_pathway:PWY-841hmmpanther:PTHR11444hmmpanther:PTHR11444:SF17HOGENOM:HOG000252916InterPro:IPR000362InterPro:IPR004769
InterPro:IPR008948InterPro:IPR013539InterPro:IPR020557InterPro:IPR022761InterPro:IPR024083KEGG:00230+4.3.2.2KEGG:00250+4.3.2.2
OMA:RDEDCIMPANTHER:PTHR11444Pfam:PF00206Pfam:PF08328PhylomeDB:Q8GUN7PRINTS:PR00149PROSITE:PS00163
Proteomes:UP000006548Reactome:R-ATH-73817RefSeq:NP_174855.2scanprosite:PS00163SMR:Q8GUN7STRING:3702.AT1G36280.1SUPFAM:SSF48557
TAIR:AT1G36280TIGRfam:TIGR00928TIGRFAMs:TIGR00928UniGene:At.39387UniPathway:UPA00074UniPathway:UPA00075UniProt:Q8GUN7
Coordinates (TAIR10) chr1:+:13640600..13642908
Molecular Weight (calculated) 58819.20 Da
IEP (calculated) 7.54
GRAVY (calculated) -0.10
Length 527 amino acids
Sequence (TAIR10)
(BLAST)
001: MELNLSSMAT KIPCSGLIPI RSLLNPSKSL SHLPRVSFSV SSPHSLKLMT STKLIAMASA SSRDFEMSNL TALSPLDGRY WGKVKDLASS MSEFGLIYFR
101: VLVEIKWLIK LSNIPQVTEV PSFSKEAHKY LQGIIDGFSM DDALQVKKIE RVTNHDVKAV EYFLKQKCES HPEIAKVLEF FHFACTSEDI NNLSHALMLQ
201: EALSSVILPT MDELIKSISL MAKSFAYVPM LSRTHGQPAS PTTLGKEMAI FAVRLSVERR YLSETKIKGK FAGAVGNYNA HISAYSNIDW PHVAEEFVTS
301: LGLTFNPYVT QIEPHDYMAR LFNTISQFNN VLIDFDRDIW SYISLGYFKQ ITKAGEIGSS TMPHKVNPID FENSEGNLGK ANAELAFLSM KLPISRMQRD
401: LTDSTVLRNM GGALGHSLLA YKSAIQGIGK LQVNEARLKD DLDHTWEVLA EPIQTVMRRY GVPEPYEKLK ELTRGRAVNE ESIRKFIKSL ELPEEAKDQL
501: LKLTPHTYVG AAAALALAVD DAVHLGH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)