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AT1G34430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26987276 (2016): plastid
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:17317660 (2007): plasma membrane
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 2-oxoacid dehydrogenases acyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 3003 (EMB3003); FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, acyltransferase activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cytosolic ribosome, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: 2-oxoacid dehydrogenases acyltransferase family protein (TAIR:AT3G25860.1); Has 22237 Blast hits to 19790 proteins in 2346 species: Archae - 125; Bacteria - 13063; Metazoa - 719; Fungi - 466; Plants - 373; Viruses - 0; Other Eukaryotes - 7491 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G34430-MONOMERBioGrid:25578EC:2.3.1.12eggNOG:COG0508eggNOG:KOG0557EMBL:AC023279EMBL:AC023913
EMBL:AY084265EMBL:AY128294EMBL:BT001042EMBL:CP002684EnsemblPlants:AT1G34430EnsemblPlants:AT1G34430.1entrez:840346
Gene3D:3.30.559.10Gene3D:4.10.320.10GeneID:840346Genevisible:Q9C8P0GO:GO:0004742GO:GO:0005886GO:GO:0006096
GO:GO:0009507GO:GO:0009570GO:GO:0009941GO:GO:0022626Gramene:AT1G34430.1gramene_pathway:2.3.1.12gramene_pathway:PYRUVDEHYD-PWY
hmmpanther:PTHR23151hmmpanther:PTHR23151:SF61HOGENOM:HOG000281566InParanoid:Q9C8P0IntAct:Q9C8P0InterPro:IPR000089InterPro:IPR001078
InterPro:IPR003016InterPro:IPR004167InterPro:IPR011053InterPro:IPR023213KEGG:ath:AT1G34430KO:K00627ncoils:Coil
OMA:ACRVEAKPaxDb:Q9C8P0Pfam:PF00198Pfam:PF00364Pfam:PF02817Pfam:Q9C8P0Pfscan:PS50968
PhylomeDB:Q9C8P0PIR:F86468PRIDE:Q9C8P0PRO:PR:Q9C8P0PROSITE:PS00189PROSITE:PS50968ProteinModelPortal:Q9C8P0
Proteomes:UP000006548RefSeq:NP_174703.1scanprosite:PS00189SMR:Q9C8P0STRING:3702.AT1G34430.1SUPFAM:SSF47005SUPFAM:SSF51230
SUPFAM:SSF52777TAIR:AT1G34430tair10-symbols:EMB3003UniGene:At.15055UniGene:At.72010UniProt:Q9C8P0
Coordinates (TAIR10) chr1:-:12588027..12590084
Molecular Weight (calculated) 48309.50 Da
IEP (calculated) 9.30
GRAVY (calculated) 0.13
Length 465 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRLLQTPFL PSVSLPTKTR SSVTGFRVKP RIIPIQAKIR EIFMPALSST MTEGKIVSWV KSEGDKLNKG ESVVVVESDK ADMDVETFYD GYLAAIMVEE
101: GGVAPVGSAI ALLAETEDEI ADAKAKASGG GGGGDSKAPP ASPPTAAVEA PVSVEKKVAA APVSIKAVAA SAVHPASEGG KRIVASPYAK KLAKELKVEL
201: AGLVGSGPMG RIVAKDVEAV AAGGGVQAAV AVKEVVAAPG VELGSVVPFT TMQGAVSRNM VESLGVPTFR VGYTISTDAL DALYKKIKSK GVTMTALLAK
301: ATALALAKHP VVNSSCRDGN SFVYNSSINV AVAVAIDGGL ITPVLQNADK VDIYSLSRKW KELVDKARAK QLQPQEYNTG TFTLSNLGMF GVDRFDAILP
401: PGTGAIMAVG ASQPSVVATK DGRIGMKNQM QVNVTADHRV IYGADLAQFL QTLASIIEDP KDLTF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)