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AT1G31180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : isopropylmalate dehydrogenase 3
Curator
Summary (TAIR10)
The AtIMD3 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids.
Computational
Description (TAIR10)
isopropylmalate dehydrogenase 3 (IMD3); FUNCTIONS IN: 3-isopropylmalate dehydrogenase activity; INVOLVED IN: leucine biosynthetic process, response to salt stress, metabolic process; LOCATED IN: thylakoid, chloroplast, chloroplast stroma, plastid; EXPRESSED IN: fruit, root, leaf; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Isopropylmalate dehydrogenase (InterPro:IPR004429), Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isopropylmalate dehydrogenase 1 (TAIR:AT5G14200.1); Has 15253 Blast hits to 15253 proteins in 2616 species: Archae - 395; Bacteria - 8280; Metazoa - 576; Fungi - 831; Plants - 243; Viruses - 0; Other Eukaryotes - 4928 (source: NCBI BLink).
Protein Annotations
BRENDA:1.1.1.85EC:1.1.1.85eggNOG:COG0473eggNOG:KOG0786EMBL:AC004793EMBL:BT025974EMBL:CP002684
EnsemblPlants:AT1G31180EnsemblPlants:AT1G31180.1entrez:840006Gene3D:3.40.718.10GeneID:840006Genevisible:Q9SA14GO:GO:0000287
GO:GO:0003862GO:GO:0009098GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009651
GO:GO:0051287Gramene:AT1G31180.1gramene_pathway:1.1.1.85gramene_pathway:LEUSYN-PWYHAMAP:MF_01033hmmpanther:PTHR11835hmmpanther:PTHR11835:SF53
HOGENOM:HOG000021112InParanoid:Q9SA14IntAct:Q9SA14InterPro:IPR001804InterPro:IPR004429InterPro:IPR019818InterPro:IPR024084
iPTMnet:Q9SA14KEGG:00290+1.1.1.85KEGG:00660+1.1.1.85KEGG:ath:AT1G31180KO:K00052OMA:ENAMFEPPANTHER:PTHR11835
PaxDb:Q9SA14Pfam:PF00180Pfam:Q9SA14PhylomeDB:Q9SA14PIR:H86437PRIDE:Q9SA14PRO:PR:Q9SA14
PROSITE:PS00470ProteinModelPortal:Q9SA14Proteomes:UP000006548RefSeq:NP_174403.1scanprosite:PS00470SMART:SM01329SMR:Q9SA14
STRING:3702.AT1G31180.1SUPFAM:SSF53659TAIR:AT1G31180tair10-symbols:ATIMD3tair10-symbols:IMD3tair10-symbols:IPMDH1TIGRfam:TIGR00169
TIGRFAMs:TIGR00169UniGene:At.40403UniPathway:UPA00048UniProt:Q9SA14
Coordinates (TAIR10) chr1:-:11142843..11144617
Molecular Weight (calculated) 43850.00 Da
IEP (calculated) 5.55
GRAVY (calculated) -0.09
Length 404 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAFLQTNIR LEIIPGRYSS LTDHKFRAPY RIRCAAASPV KKRYNITLLP GDGIGPEVIS VAKNVLQKAG FLQGLEFDFQ EMPFGGAALD LVGVPLPEET
101: STAAKQSDAI LLGAIGGYKW DKNEKHLRPE MGLLNIRRDL NVFANLRPAT VLPQLVDAST LKKEVAQGVD MMIVRELTGG IYFGEPRGIT INENGEEVGF
201: NTEIYAAHEI DRIARVAFET ARKRRGKLCS VDKANVLDAS ILWRKRVTAL ASEYPDVELS HMYVDNAAMQ LVRDPKQFDT IVTNNIFGDI LSDEASMITG
301: SIGMLPSASL GESGPGLFEP IHGSAPDIAG QDKANPLATI LSAAMLLKYG LGEEKAAKMI EDAVVDALNK GFRTGDIYSP GNKLVGCKEM GEEVLKSVDS
401: KVPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)