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AT1G30120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : pyruvate dehydrogenase E1 beta
Curator
Summary (TAIR10)
Encodes a putative plastid pyruvate dehydrogenase E1 beta subunit that is distinct from the mitochondrial pyruvate dehydrogenase E1 beta subunit.
Computational
Description (TAIR10)
pyruvate dehydrogenase E1 beta (PDH-E1 BETA); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: plastid pyruvate dehydrogenase complex, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: Transketolase family protein (TAIR:AT2G34590.1); Has 14229 Blast hits to 14219 proteins in 2378 species: Archae - 200; Bacteria - 8952; Metazoa - 481; Fungi - 222; Plants - 270; Viruses - 0; Other Eukaryotes - 4104 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G30120-MONOMERBioGrid:25126EC:1.2.4.1eggNOG:COG0022eggNOG:KOG0524EMBL:AC074176EMBL:AF361583
EMBL:AK221898EMBL:AY087733EMBL:AY093988EMBL:CP002684EMBL:U80186EnsemblPlants:AT1G30120EnsemblPlants:AT1G30120.1
entrez:839891Gene3D:3.40.50.920Gene3D:3.40.50.970GeneID:839891Genevisible:Q9C6Z3GO:GO:0004739GO:GO:0006096
GO:GO:0006633GO:GO:0009507GO:GO:0009570GO:GO:0009941GO:GO:0010240Gramene:AT1G30120.1gramene_pathway:1.2.4.1
gramene_pathway:PYRUVDEHYD-PWYhmmpanther:PTHR11624hmmpanther:PTHR11624:SF76HOGENOM:HOG000281450InParanoid:Q9C6Z3IntAct:Q9C6Z3InterPro:IPR005475
InterPro:IPR009014InterPro:IPR029061InterPro:IPR033247InterPro:IPR033248KEGG:ath:AT1G30120KO:K00162OMA:THKIVIV
PANTHER:PTHR11624PaxDb:Q9C6Z3Pfam:PF02779Pfam:PF02780Pfam:Q9C6Z3PhylomeDB:Q9C6Z3PIR:C86425
PRIDE:Q9C6Z3PRO:PR:Q9C6Z3ProteinModelPortal:Q9C6Z3Proteomes:UP000006548RefSeq:NP_174304.1SMART:SM00861SMR:Q9C6Z3
STRING:3702.AT1G30120.1SUPFAM:SSF52518SUPFAM:SSF52922TAIR:AT1G30120tair10-symbols:PDH-E1 BETAUniGene:At.10483UniGene:At.70613
UniProt:Q9C6Z3
Coordinates (TAIR10) chr1:-:10584350..10586477
Molecular Weight (calculated) 44247.30 Da
IEP (calculated) 6.32
GRAVY (calculated) -0.09
Length 406 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)