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AT1G29070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L34
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L34; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34 (InterPro:IPR000271); Has 615 Blast hits to 615 proteins in 261 species: Archae - 0; Bacteria - 556; Metazoa - 0; Fungi - 11; Plants - 33; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J20BeggNOG:ENOG410Y1JVEMBL:AC021043EMBL:AY063876EMBL:AY084670EMBL:AY091237EMBL:CP002684
EnsemblPlants:AT1G29070EnsemblPlants:AT1G29070.1entrez:839781GeneID:839781Genevisible:Q9LP37GO:GO:0003735GO:GO:0005840
GO:GO:0006412GO:GO:0009507GO:GO:0019843Gramene:AT1G29070.1HAMAP:MF_00391hmmpanther:PTHR14503hmmpanther:PTHR14503:SF3
HOGENOM:HOG000154136InParanoid:Q9LP37InterPro:IPR000271KEGG:ath:AT1G29070KO:K02914OMA:MQIRAGKPANTHER:PTHR14503
PaxDb:Q9LP37Pfam:PF00468Pfam:Q9LP37PhylomeDB:Q9LP37PIR:A86413PRIDE:Q9LP37PRO:PR:Q9LP37
ProDom:PD003101ProteinModelPortal:Q9LP37Proteomes:UP000006548RefSeq:NP_174202.1SMR:Q9LP37STRING:3702.AT1G29070.1TAIR:AT1G29070
UniGene:At.27447UniProt:Q9LP37
Coordinates (TAIR10) chr1:+:10149884..10151155
Molecular Weight (calculated) 16742.10 Da
IEP (calculated) 12.84
GRAVY (calculated) -0.42
Length 157 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLSTSVVA SASSRLWNPA ASNGKICVPS ASLSLRTGCR RSSSSLTSSA SSQLLHCSFL SSPVSLASPF SGLSIAFDLS SQTSGLNGQR RRGLVVRAGK
101: AALCQTKRSR SRKSLARTHG FRRRMRTTSG RATIKRRRAK GRWNLCPKSN PSSGKRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)