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AT1G23820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.937
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : spermidine synthase 1
Curator
Summary (TAIR10)
Spermidine synthase.
Computational
Description (TAIR10)
spermidine synthase 1 (SPDS1); FUNCTIONS IN: spermidine synthase activity; INVOLVED IN: spermidine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 2 (TAIR:AT1G70310.1); Has 5258 Blast hits to 5255 proteins in 1502 species: Archae - 169; Bacteria - 2896; Metazoa - 353; Fungi - 199; Plants - 416; Viruses - 0; Other Eukaryotes - 1225 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2854-MONOMERBioGrid:24231EC:2.5.1.16eggNOG:COG0421eggNOG:KOG1562EMBL:AC005990EMBL:AJ251296
EMBL:AJ252215EMBL:AY062593EMBL:AY093360EMBL:CP002684EnsemblPlants:AT1G23820EnsemblPlants:AT1G23820.1entrez:838993
EvolutionaryTrace:Q9ZUB3ExpressionAtlas:Q9ZUB3Gene3D:3.40.50.150GeneID:838993Genevisible:Q9ZUB3GO:GO:0004766GO:GO:0008295
Gramene:AT1G23820.1gramene_pathway:2.5.1.16gramene_pathway:BSUBPOLYAMSYN-PWYHAMAP:MF_00198hmmpanther:PTHR11558hmmpanther:PTHR11558:SF25HOGENOM:HOG000256147
InParanoid:Q9ZUB3IntAct:Q9ZUB3InterPro:IPR001045InterPro:IPR029063InterPro:IPR030373InterPro:IPR030374InterPro:IPR030668
KEGG:00270+2.5.1.16KEGG:00330+2.5.1.16KEGG:00410+2.5.1.16KEGG:00480+2.5.1.16KEGG:ath:AT1G23820KO:K00797PaxDb:Q9ZUB3
PDB:1XJ5PDB:2Q41PDBsum:1XJ5PDBsum:2Q41Pfam:PF01564Pfam:Q9ZUB3Pfscan:PS51006
PhylomeDB:Q9ZUB3PIR:F86372PIRSF:PIRSF000502PRIDE:Q9ZUB3PRO:PR:Q9ZUB3PROSITE:PS01330PROSITE:PS51006
ProteinModelPortal:Q9ZUB3Proteomes:UP000006548Reactome:R-ATH-351202RefSeq:NP_173794.2scanprosite:PS01330SMR:Q9ZUB3STRING:3702.AT1G23820.1
SUPFAM:SSF53335TAIR:AT1G23820tair10-symbols:SPDS1TIGRfam:TIGR00417TIGRFAMs:TIGR00417UniGene:At.10951UniGene:At.22492
UniPathway:UPA00248UniProt:Q9ZUB3
Coordinates (TAIR10) chr1:+:8420278..8422724
Molecular Weight (calculated) 41681.60 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.13
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MIFSVVRSSL PYIFRFTSHQ NHHLSQTLVP PLSHFSEIFT RAITMDAKET SATDLKRPRE EDDNGGAATM ETENGDQKKE PACFSTVIPG WFSEMSPMWP
101: GEAHSLKVEK VLFQGKSDYQ DVIVFQSATY GKVLVLDGVI QLTERDECAY QEMITHLPLC SIPNPKKVLV IGGGDGGVLR EVARHASIEQ IDMCEIDKMV
201: VDVSKQFFPD VAIGYEDPRV NLVIGDGVAF LKNAAEGSYD AVIVDSSDPI GPAKELFEKP FFQSVARALR PGGVVCTQAE SLWLHMDIIE DIVSNCREIF
301: KGSVNYAWTS VPTYPSGVIG FMLCSTEGPD VDFKHPLNPI DESSSKSNGP LKFYNAEIHS AAFCLPSFAK KVIESKAN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)