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AT1G23310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glutamate:glyoxylate aminotransferase
Curator
Summary (TAIR10)
Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.
Computational
Description (TAIR10)
glutamate:glyoxylate aminotransferase (GGT1); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity, alanine-glyoxylate transaminase activity; INVOLVED IN: photorespiration; LOCATED IN: apoplast, peroxisome, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: alanine-2-oxoglutarate aminotransferase 2 (TAIR:AT1G70580.4); Has 27976 Blast hits to 27968 proteins in 2949 species: Archae - 777; Bacteria - 19095; Metazoa - 617; Fungi - 736; Plants - 1276; Viruses - 0; Other Eukaryotes - 5475 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT1G23310-MONOMERBioGrid:24179BRENDA:2.3.2.2EC:2.6.1.-EC:2.6.1.2EC:2.6.1.4EC:2.6.1.44
eggNOG:COG0436eggNOG:KOG0258EMBL:AC005292EMBL:AF360195EMBL:AF479639EMBL:AK316871EMBL:AY042902
EMBL:AY056379EMBL:AY058868EMBL:AY150373EMBL:BT002643EMBL:CP002684EnsemblPlants:AT1G23310EnsemblPlants:AT1G23310.1
entrez:838940Gene3D:3.40.640.10Gene3D:3.90.1150.10GeneID:838940Genevisible:Q9LR30GO:GO:0001666GO:GO:0004021
GO:GO:0005773GO:GO:0005777GO:GO:0006545GO:GO:0008453GO:GO:0009507GO:GO:0009853GO:GO:0016020
GO:GO:0030170GO:GO:0042853GO:GO:0047958GO:GO:0048046gramene_pathway:2.6.1.2gramene_pathway:2.6.1.4gramene_pathway:ALANINE-DEG3-PWY
gramene_pathway:ALANINE-SYN2-PWYgramene_pathway:GLYSYN2-PWYgramene_pathway:PWY-181gramene_plant_reactome:1119330gramene_plant_reactome:6873456hmmpanther:PTHR11751hmmpanther:PTHR11751:SF373
HOGENOM:HOG000215020InParanoid:Q9LR30IntAct:Q9LR30InterPro:IPR004839InterPro:IPR015421InterPro:IPR015422InterPro:IPR015424
iPTMnet:Q9LR30KEGG:ath:AT1G23310KO:K14272OMA:HRGYSRMPaxDb:Q9LR30Pfam:PF00155Pfam:Q9LR30
PhylomeDB:Q9LR30PIR:B86367PRIDE:Q9LR30PRO:PR:Q9LR30ProMEX:Q9LR30ProteinModelPortal:Q9LR30Proteomes:UP000006548
Reactome:R-ATH-70614RefSeq:NP_001031083.1RefSeq:NP_564192.2SABIO-RK:Q9LR30SMR:Q9LR30STRING:3702.AT1G23310.1SUPFAM:SSF53383
TAIR:AT1G23310tair10-symbols:AOAT1tair10-symbols:GGAT1tair10-symbols:GGT1UniGene:At.24749UniPathway:UPA00288UniPathway:UPA00322
UniPathway:UPA00528UniProt:Q9LR30
Coordinates (TAIR10) chr1:-:8268720..8271329
Molecular Weight (calculated) 53304.30 Da
IEP (calculated) 6.88
GRAVY (calculated) -0.18
Length 481 amino acids
Sequence (TAIR10)
(BLAST)
001: MALKALDYDT LNENVKKCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVALCQAPF LLDDPNVGML FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GVRKEVAEFI QRRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGNGDGILV PVPQYPLYSA TISLLGGTLV PYYLDESENW GLDVANLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILKFCY NEKLVLLGDE VYQQNIYQDE RPFISSKKVL MEMGSPFSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNLP PRVVEEIYKV ASIALSPNVS AQIFMGLMVN PPKPGDISYD QFARESKGIL ESLRRRARLM TDGFNSCKNV VCNFTEGAMY SFPQIRLPTG
401: ALQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EDEMPEIMDS FKKFNDEFMT QYDNNFGYSK M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)