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AT1G22740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:11844103 (2002): plant-type vacuole
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog G3B
Curator
Summary (TAIR10)
GTP-binding protein Rab7
Computational
Description (TAIR10)
RAB GTPase homolog G3B (RABG3B); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3A (TAIR:AT4G09720.1); Has 25691 Blast hits to 25666 proteins in 724 species: Archae - 21; Bacteria - 135; Metazoa - 13533; Fungi - 3489; Plants - 2837; Viruses - 20; Other Eukaryotes - 5656 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNZVeggNOG:KOG0394EMBL:AB071850EMBL:AC003979EMBL:BT024589EMBL:CP002684EMBL:Y09821
EMBL:Y12227EnsemblPlants:AT1G22740EnsemblPlants:AT1G22740.1entrez:838880Gene3D:3.40.50.300GeneID:838880Genevisible:O04157
GO:GO:0005525GO:GO:0005773GO:GO:0005886GO:GO:0007264GO:GO:0010089GO:GO:0010508GO:GO:0010623
GO:GO:0015031GO:GO:0048102Gramene:AT1G22740.1hmmpanther:PTHR24073hmmpanther:PTHR24073:SF589HOGENOM:HOG000233968InParanoid:O04157
InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT1G22740KO:K07897OMA:MEWCASKPaxDb:O04157
Pfam:O04157Pfam:PF00071Pfscan:PS51419PhylomeDB:O04157PIR:T00770PRIDE:O04157PRO:PR:O04157
PROSITE:PS51419ProteinModelPortal:O04157Proteomes:UP000006548RefSeq:NP_173688.1SMR:O04157STRING:3702.AT1G22740.1SUPFAM:SSF52540
TAIR:AT1G22740tair10-symbols:ATRABG3Btair10-symbols:RAB7tair10-symbols:RAB75tair10-symbols:RABG3BTIGRfam:TIGR00231TIGRFAMs:TIGR00231
UniGene:At.20067UniProt:O04157
Coordinates (TAIR10) chr1:+:8049247..8050494
Molecular Weight (calculated) 22946.10 Da
IEP (calculated) 5.09
GRAVY (calculated) -0.37
Length 203 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTRRRTLLK VIILGDSGVG KTSLMNQYVN NKFSQQYKAT IGADFVTKEL QIDDRLVTLQ IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NHLKSFESLD
101: NWHNEFLTRA SPRDPMAFPF ILLGNKVDID GGNSRVVSEK KAREWCAEKG NIVYFETSAK EDYNVDDSFL CITKLALANE RDQDIYFQPD TGSVPEQRGG
201: CAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)