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AT1G22700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Encodes a TPR protein with homology to Ycf37 from Synechocystis that is localized to the thylakoid membrane and is involved in photosystem I biogenesis.
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: photosystem I assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 4976 Blast hits to 3489 proteins in 588 species: Archae - 121; Bacteria - 1806; Metazoa - 382; Fungi - 139; Plants - 249; Viruses - 0; Other Eukaryotes - 2279 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ITNQeggNOG:ENOG4111J4MEMBL:AK317512EMBL:CP002684
EnsemblPlants:AT1G22700EnsemblPlants:AT1G22700.1entrez:838876ExpressionAtlas:B9DHG0
Gene3D:1.25.40.10GeneID:838876GO:GO:0009507GO:GO:0009535
GO:GO:0016021GO:GO:0048564Gramene:AT1G22700.1hmmpanther:PTHR26312
hmmpanther:PTHR26312:SF66InterPro:IPR001440InterPro:IPR011990InterPro:IPR013026
InterPro:IPR019734OMA:IAQFEMAPfam:PF00515Pfam:PF13414
Pfscan:PS50005Pfscan:PS50293PhylomeDB:B9DHG0PROSITE:PS50005
PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_850950.1SMART:SM00028
SMR:B9DHG0STRING:3702.AT1G22700.1SUPFAM:SSF48452TAIR:AT1G22700
TMHMM:TMhelixUniGene:At.24760UniProt:B9DHG0
Coordinates (TAIR10) chr1:-:8028323..8029878
Molecular Weight (calculated) 33664.10 Da
IEP (calculated) 9.92
GRAVY (calculated) -0.09
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MFESNMVLQT LSSSSPPIHR LYLHHSQILP SSGSPSKISL QIHGRTLAIR SFHDYVFAEI SARGLPALNK ASLKKLPIKG STFLLGQSLL MVSAHPQLAA
101: AAEIIKPEPI YEVGELFELS IQLSYLLLLL GLLGVGTFYV IRQVLVRREL DLSAKELQEQ VRSGDASATE LFELGAVMLR RKFYPAANKF LQQAIQKWDG
201: DDQDLAQVYN ALGVSYVRED KLDKGIAQFE MAVKLQPGYV TAWNNLGDAY EKKKELPLAL NAFEEVLLFD PNNKVARPRR DALKDRVKLY KGVVAVKSKK
301: R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)