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AT1G21440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phosphoenolpyruvate carboxylase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phosphoenolpyruvate carboxylase family protein; FUNCTIONS IN: isocitrate lyase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Isocitrate lyase/phosphorylmutase, conserved site (InterPro:IPR018523), Isocitrate lyase/phosphorylmutase (InterPro:IPR000918); BEST Arabidopsis thaliana protein match is: Phosphoenolpyruvate carboxylase family protein (TAIR:AT1G77060.1); Has 8771 Blast hits to 8771 proteins in 1489 species: Archae - 119; Bacteria - 4900; Metazoa - 32; Fungi - 522; Plants - 172; Viruses - 0; Other Eukaryotes - 3026 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G21440-MONOMEReggNOG:COG2513eggNOG:ENOG410IP73EMBL:AK226495EMBL:BT022010EMBL:BT023484EMBL:CP002684
EnsemblPlants:AT1G21440EnsemblPlants:AT1G21440.1entrez:838742Gene3D:3.20.20.60GeneID:838742GO:GO:0003824GO:GO:0009507
GO:GO:0009570Gramene:AT1G21440.1gramene_pathway:4.1.3.1gramene_pathway:GLYOXYLATE-BYPASShmmpanther:PTHR21631hmmpanther:PTHR21631:SF4HOGENOM:HOG000220040
IntAct:Q501F7InterPro:IPR015813InterPro:IPR018523KEGG:ath:AT1G21440OMA:WYELETKPfam:PF13714PhylomeDB:Q501F7
PROSITE:PS00161Proteomes:UP000006548RefSeq:NP_173565.2scanprosite:PS00161SMR:Q501F7STRING:3702.AT1G21440.1SUPFAM:SSF51621
TAIR:AT1G21440UniGene:At.41656UniProt:Q501F7
Coordinates (TAIR10) chr1:-:7502325..7504103
Molecular Weight (calculated) 36308.60 Da
IEP (calculated) 7.18
GRAVY (calculated) -0.15
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMLMAAKST SLFSSNPTIS AKIGQNPRGV RSVYPTVRMQ SRVHRLIEEQ GAVLIPGVYD ALSAAIVQQT GFSAALISGY ALSAVTLGKP DFGLITPPEM
101: AATARSVCAA APKIPIIADA DTGGGNALNV QRTVKDLIAA GAAGCFLEDQ AWPKRCGHMR GKEVIPAEEH AAKIASARDA IGDADFFLIA RTDARALSAK
201: TGLSDAIDRA NLYMEAGADA SFVEAPRDDD ELKEIGRRTK GYRLCNMLEG GRTPLHTPDE LKEMGFHLIA HPLTSLYAST RALVDVLKIL KEKGTTKDHL
301: EKMITFEEFN RLVNLDSWYE LETKYSNLRN ALGETK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)