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AT1G19520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : pentatricopeptide (PPR) repeat-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NUCLEAR FUSION DEFECTIVE 5 (NFD5); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G01970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:23777eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC025808
EMBL:AY052347EMBL:AY061908EMBL:CP002684EnsemblPlants:AT1G19520
EnsemblPlants:AT1G19520.1entrez:838538ExpressionAtlas:Q940Z1Gene3D:1.25.40.10
GeneID:838538Genevisible:Q940Z1Gramene:AT1G19520.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF515HOGENOM:HOG000070479InParanoid:Q940Z1IntAct:Q940Z1
InterPro:IPR002885InterPro:IPR011990InterPro:IPR033443ncoils:Coil
PaxDb:Q940Z1Pfam:PF01535Pfam:PF13812Pfam:PF17177
Pfam:Q940Z1Pfscan:PS51375PIR:A86328PRIDE:Q940Z1
PRO:PR:Q940Z1PROSITE:PS51375ProteinModelPortal:Q940Z1Proteomes:UP000006548
RefSeq:NP_564088.2SMR:Q940Z1STRING:3702.AT1G19520.1TAIR:AT1G19525
tair10-symbols:NFD5TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.21691
UniProt:Q940Z1
Coordinates (TAIR10) chr1:+:6760032..6762581
Molecular Weight (calculated) 82540.30 Da
IEP (calculated) 5.03
GRAVY (calculated) -0.55
Length 725 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSFLLSRQA IHRISLLSSK TPTFCRNFSA ITSTISHSDR HLRSYDEQTP FQNVEIPRPI SSFNRYFHFT RESRLSESSA AIDDSNDQEE DDEDGTTNEF
101: LSRFVWIMRG KVSEAYPDCD KKMIDGMLLL IVEKVVEEIE RGGFNKVGSA PPSPSSEFSD DLWATIWEVS NTVLKDMEKE RKKEKMKQYV QSPEVMEMCR
201: FAGEIGIRGD LLRELRFKWA REKMDDAEFY ESLEQQRDLD NSIRESETVD GEVEEEGFVP SDEVESRSIS LPKRKGKLKY KIYGLELSDP KWVEMADKIH
301: EAEEEADWRE PKPVTGKCKL VMEKLESLQE GDDPSGLLAE WAELLEPNRV DWIALINQLR EGNTHAYLKV AEGVLDEKSF NASISDYSKL IHIHAKENHI
401: EDVERILKKM SQNGIFPDIL TATALVHMYS KSGNFERATE AFENLKSYGL RPDEKIYEAM ILGYVNAGKP KLGERLMKEM QAKELKASEE VYMALLRAYA
501: QMGDANGAAG ISSSMQYASD GPLSFEAYSL FVEAYGKAGQ VDKAKSNFDE MRKLGHKPDD KCIANLVRAY KGENSLDKAL RLLLQLEKDG IEIGVITYTV
601: LVDWMANLGL IEEAEQLLVK ISQLGEAPPF ELQVSLCCMY SGVRNEKKTL QALGVLEAKR DQMGPNEFDK VISALKRGGF EKDARRMYKY MEARKFLPSQ
701: RLQMDMVAPP RAFGSGSGRV RRFNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)