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AT1G18170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G73655.1); Has 2743 Blast hits to 2728 proteins in 885 species: Archae - 0; Bacteria - 1518; Metazoa - 283; Fungi - 83; Plants - 455; Viruses - 0; Other Eukaryotes - 404 (source: NCBI BLink).
Protein Annotations
EC:5.2.1.8eggNOG:COG0545eggNOG:KOG0552EMBL:AC034107EMBL:AC069551EMBL:AF334381EMBL:AY088153
EMBL:CP002684EnsemblPlants:AT1G18170EnsemblPlants:AT1G18170.1entrez:838396GeneID:838396Genevisible:Q9LDY5GO:GO:0003755
GO:GO:0006457GO:GO:0009507GO:GO:0009535GO:GO:0009543Gramene:AT1G18170.1hmmpanther:PTHR10516hmmpanther:PTHR10516:SF308
HOGENOM:HOG000240354InParanoid:Q9LDY5InterPro:IPR001179InterPro:IPR023566KEGG:ath:AT1G18170OMA:PNLGFGEPANTHER:PTHR10516
PaxDb:Q9LDY5Pfam:PF00254Pfam:Q9LDY5Pfscan:PS50059PhylomeDB:Q9LDY5PRIDE:Q9LDY5PRO:PR:Q9LDY5
PROSITE:PS50059ProteinModelPortal:Q9LDY5Proteomes:UP000006548RefSeq:NP_564048.1SMR:Q9LDY5STRING:3702.AT1G18170.1SUPFAM:SSF54534
TAIR:AT1G18170UniGene:At.20994UniProt:Q9LDY5
Coordinates (TAIR10) chr1:+:6254291..6255507
Molecular Weight (calculated) 26530.80 Da
IEP (calculated) 9.29
GRAVY (calculated) -0.27
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MANLFTATAP FLSLSKPFTK TASYHQCYAS SSNPPEPESS SPPPPPPPPQ PLASQQKRKK NVETTDWVAS SLTRRFGIGA GLAWAGFLAF GVISEQIKTR
101: IEVSQEVANT RDVEEEKEIV LPNGIRYYDQ RVGGGATPRA GDLVVIDLKG QVQGTGQVFV DTFGTKDKKK MKPLALVVGS KPYSKGLCEG IDYVLRSMKA
201: GGKRRVIVPP SLGFGVDGAE LESGLQIPPN ASLEYIVEID RVSIAPA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)