AT1G17870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ethylene-dependent gravitropism-deficient and yellow-green-like 3 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442–454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171–179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 (EGY3); INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: Peptidase M50 family protein (TAIR:AT5G35220.1); Has 660 Blast hits to 652 proteins in 203 species: Archae - 107; Bacteria - 240; Metazoa - 53; Fungi - 13; Plants - 117; Viruses - 1; Other Eukaryotes - 129 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6150036..6152185 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62721.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.86 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 573 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASLFVSTPS SSLTLKSCHS LHLRRFDRAE FSNFGKASVN QTTRSRHSLR CSAEDDRVRE PVNEAPSPVA LAEEQKEDHD NNNAPPSPES SEEEEEKKSK 101: QQEMDWKTDE EFKKFMGNPS IEAAIKLEKT RTDRKLKELN KESNSENPII GIYNSLARDS LTKEKERLEK AEETFKALDL NKLKSCFGFD TFFATDVRRF 201: GDGGIFIGNL RKPIDEVTPK LEAKLSEAAG RDVVVWFMEE RSNEITKQVC MVQPKAEIDL QFESTRLSTP WGYVSAIALC VTTFGTIALM SGFFLKPDAT 301: FDDYIANVVP LFGGFLSILG VSEIATRVTA ARHGVKLSPS FLVPSNWTGC LGVMNNYESL LPNKKALFDI PVARTASAYL TSLLLAAAAF ISDGSFNGGD 401: NALYIRPQFF DNNPLLSFVQ FVVGPYADDL GNVLPNAVEG VGVPVDPLAF AGLLGMVVTS LNLLPCGRLE GGRIAQAMFG RSTAAILSFT TSLLLGIGGL 501: SGSVLCLAWG LFATFFRGGE ETPAKDEITP VGDDRFAWGI VLGLICFLTL FPNSGGTFST SFFNGPFFRG DDF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)