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AT1G17745.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D-3-phosphoglycerate dehydrogenase
Curator
Summary (TAIR10)
encodes a 3-Phosphoglycerate dehydrogenase
Computational
Description (TAIR10)
3-phosphoglycerate dehydrogenase (PGDH); FUNCTIONS IN: phosphoglycerate dehydrogenase activity, protein binding; INVOLVED IN: L-serine biosynthetic process; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: D-3-phosphoglycerate dehydrogenase (InterPro:IPR006236), D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), D-3-phosphogylcerate Dehydrogenase (InterPro:IPR015508), Amino acid-binding ACT (InterPro:IPR002912), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-3-phosphoglycerate dehydrogenase (TAIR:AT4G34200.1); Has 30450 Blast hits to 30444 proteins in 2726 species: Archae - 473; Bacteria - 18179; Metazoa - 739; Fungi - 1175; Plants - 595; Viruses - 5; Other Eukaryotes - 9284 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G17745-MONOMERBioCyc:ARA:GQT-2493-MONOMERBioCyc:MetaCyc:AT1G17745-MONOMERBioGrid:23591EC:1.1.1.95eggNOG:COG0111eggNOG:KOG0068
EMBL:AB003280EMBL:AB010407EMBL:AC034257EMBL:AY050399EMBL:AY086001EMBL:AY098953EMBL:CP002684
EnsemblPlants:AT1G17745EnsemblPlants:AT1G17745.1EnsemblPlants:AT1G17745.2entrez:838352ExpressionAtlas:O04130Gene3D:3.30.1330.90Gene3D:3.40.50.720
GeneID:838352Genevisible:O04130GO:GO:0004617GO:GO:0006564GO:GO:0009507GO:GO:0016597GO:GO:0051287
gramene_pathway:1.1.1.95gramene_pathway:SERSYN-PWYhmmpanther:PTHR10996hmmpanther:PTHR10996:SF159HOGENOM:HOG000136693InParanoid:O04130IntAct:O04130
InterPro:IPR002912InterPro:IPR006139InterPro:IPR006140InterPro:IPR006236InterPro:IPR016040InterPro:IPR029009InterPro:IPR029752
InterPro:IPR029753iPTMnet:O04130KEGG:00260+1.1.1.95KEGG:00680+1.1.1.95KEGG:ath:AT1G17745KO:K00058OMA:EPISDSY
PaxDb:O04130Pfam:O04130Pfam:PF00389Pfam:PF01842Pfam:PF02826Pfscan:PS51671PhylomeDB:O04130
PIR:T52296PRIDE:O04130PRO:PR:O04130PROSITE:PS00065PROSITE:PS00670PROSITE:PS00671PROSITE:PS51671
ProteinModelPortal:O04130Proteomes:UP000006548Reactome:R-ATH-977347RefSeq:NP_001031061.2RefSeq:NP_564034.1SABIO-RK:O04130scanprosite:PS00065
scanprosite:PS00670scanprosite:PS00671SMR:O04130STRING:3702.AT1G17745.2SUPFAM:SSF143548SUPFAM:SSF51735SUPFAM:SSF52283
SUPFAM:SSF55021TAIR:AT1G17745tair10-symbols:PGDHTIGRfam:TIGR01327TIGRFAMs:TIGR01327UniGene:At.21252UniGene:At.73011
UniPathway:UPA00135UniProt:O04130
Coordinates (TAIR10) chr1:+:6101157..6104979
Molecular Weight (calculated) 66457.80 Da
IEP (calculated) 5.97
GRAVY (calculated) 0.02
Length 624 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFSSSCSSV KAVNSRWTSP SPSPSSRFAV LPAFLHRRYA TSVKLTAISA ALKTVEQTTL TEDNRFSTVG SDSDEYNPTL PKPRILVTEK LGEAGVNLLR
101: EFGDVDCSYD LSPEDLKKKV AESDALIVRS GTKVTREVFE AAKGRLKVVG RAGVGIDNVD LQAATEHGCL VVNAPTANTV AAAEHGIALL ASMARNVAQA
201: DASIKAGKWE RSKYVGVSLV GKTLAVMGFG KVGTEVARRA KGLGMTVISH DPYAPADRAR ALGVDLVSFD QAISTADFVS LHMPLTPATK KVFNDETFSK
301: MKKGVRLINV ARGGVIDEDA LVRALDAGIV AQAALDVFCE EPPSKDSRLI QHENVTVTPH LGASTKEAQE GVAIEIAEAV AGALKGELSA TAVNAPMVAP
401: EVLSELTPYI VLAEKLGRLA VQLASGGKGV QSIRVVYRSA RDRDDLDTRL LRAMITKGII EPISDSYVNL VNADFIAKQK GLRISEERMV VDSSPEYPVD
501: SIQVQILNVE SNFAGAVSDA GDISIEGKVK YGVPHLTCVG SFGVDVSLEG NLILCRQVDQ PGMIGQVGNI LGEQNVNVNF MSVGRTVLRK QAIMAIGVDE
601: EPDNKTLERI GGVSAIEEFV FLKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)