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AT1G17580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : myosin 1
Curator
Summary (TAIR10)
Encodes a member of the type XI myosin protein family involved in organelle trafficking and overall plant development.
Computational
Description (TAIR10)
myosin 1 (MYA1); FUNCTIONS IN: motor activity; INVOLVED IN: in 8 processes; LOCATED IN: myosin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT5G20490.1); Has 18995 Blast hits to 13821 proteins in 1312 species: Archae - 114; Bacteria - 980; Metazoa - 11844; Fungi - 1348; Plants - 1046; Viruses - 13; Other Eukaryotes - 3650 (source: NCBI BLink).
Protein Annotations
BioGrid:23573eggNOG:COG5022eggNOG:KOG0160EMBL:AC022492EMBL:CP002684EMBL:Z28389EnsemblPlants:AT1G17580
EnsemblPlants:AT1G17580.1entrez:838333Gene3D:3.40.50.300GeneID:838333Genevisible:Q39160GO:GO:0003774GO:GO:0005524
GO:GO:0005737GO:GO:0009791GO:GO:0010090GO:GO:0010154GO:GO:0016049GO:GO:0016459GO:GO:0030048
GO:GO:0042802GO:GO:0048467GO:GO:0051301GO:GO:0051645GO:GO:0051646GO:GO:0060151GO:GO:0090436
Gramene:AT1G17580.1hmmpanther:PTHR13140hmmpanther:PTHR13140:SF440HOGENOM:HOG000029608InParanoid:Q39160InterPro:IPR000048InterPro:IPR001609
InterPro:IPR002710InterPro:IPR004009InterPro:IPR027417KEGG:ath:AT1G17580ncoils:CoilOMA:MFLLERSPaxDb:Q39160
Pfam:PF00063Pfam:PF00612Pfam:PF01843Pfam:PF02736Pfam:Q39160Pfscan:PS50096Pfscan:PS51126
Pfscan:PS51456PhylomeDB:Q39160PIR:S46444PRIDE:Q39160PRINTS:PR00193PRO:PR:Q39160PROSITE:PS50096
PROSITE:PS51126PROSITE:PS51456ProteinModelPortal:Q39160Proteomes:UP000006548RefSeq:NP_173201.2SMART:SM00015SMART:SM00242
SMART:SM01132STRING:3702.AT1G17580.1SUPFAM:SSF52540TAIR:AT1G17580tair10-symbols:ATMYA1tair10-symbols:MYA1tair10-symbols:XI-1
UniGene:At.21949UniProt:Q39160
Coordinates (TAIR10) chr1:+:6039453..6049309
Molecular Weight (calculated) 172918.00 Da
IEP (calculated) 8.42
GRAVY (calculated) -0.36
Length 1520 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAAPVIIVGS HVWVEDPHLA WIDGEVTRID GINVHVKTKK GKTVVTNVYF PKDTEAPSGG VDDMTKLSYL HEPGVLRNLE TRYELNEIYT YTGNILIAVN
0101: PFQRLPHIYE TDMMEQYKGI ALGELSPHVF AIGDAAYRAM INEGKNNSIL VSGESGAGKT ETTKMLMRYL AFLGGRSGVE GRTVEQQVLE SNPVLEAFGN
0201: AKTLRNNNSS RFGKFVEIQF DKNGRISGAA IRTYLLERSR VCQISDPERN YHCFYLLCAA PPEDIKKYKL ENPHKFHYLN QSSCYKLDGV DDASEYLETR
0301: RAMDVVGISN EEQEAIFRVV AAILHLGNID FGKGEEIDSS VIKDKDSRSH LNMAAELLMC NAQSLEDALI RRVMVTPEEI ITRTLDPDNA IASRDTLAKT
0401: IYSHLFDWIV NKINTSIGQD PRSKSIIGVL DIYGFESFKC NSFEQFCINF TNEKLQQHFN QHVFKMEQEE YTKEEIAWSY IEFIDNQDVL ELIEKKPGGI
0501: ISLLDEACMF PKSTHETFSQ KLFQTFKEHE RFAKPKLSRT DFTISHYAGE VTYQSNHFID KNKDYIVAEH QALFTASNCK FVAGLFHALH EDSSRSSKFS
0601: SIGSRFKQQL HSLMESLNGT EPHYIRCIKP NNVLKPGIFE NFNVIHQLRC GGVLEAIRIS CAGYPTRLAF YDFLDRFGLL APEVLEGNYD DKVACQMILD
0701: KKSLTDYQIG KTKIFLRAGQ MAELDARRAE VLGNAARVIQ RQFRTCMARK NYRSIRNAAI VLQSFLRGEI ARAVHKKLRI EAAALRVQKN FRRYVDRKSF
0801: VTTRSSTIVL QTGLRAMIAR SEFRLRRQRK AAIVLQAHWR GRQAFSYYTR LQKAAIVTQC AWRCRLARRE LRMLKMAARD TGALKDAKNK LEQRVEELSL
0901: RLHLEKRLRT DLEEAKVQEV AKLQEALHTM RLQLKETTAM VVKEQEAARV AIEEASSVNK EPVVVEDTEK IDSLSNEIDR LKGLLSSETH KADEAQHAYQ
1001: SALVQNEELC KKLEEAGRKI DQLQDSVQRF QEKVFSLESE NKVLRQQTLT ISPTTRALAL RPKTTIIQRT PEKDTFSNGE TTQLQEPETE DRPQKSLNQK
1101: QQENQELLLK SISEDIGFSE GKPVAACLIY KCLIHWRSFE VERTSIFNRI IETIASAIEM QENSDVLCYW LSNSATLLMF LQRTLKAGAT GSITTPRRRG
1201: MPSSLFGRVS QSFRGSPQSA GFPFMTGRAI GGGLDELRQV EAKYPALLFK QQLTAFLEKI YGMIRDKMKK EISPLLASCI QVPRTPRSGL VKGRSQNTQN
1301: NVVAPKPMIA HWQNIVTCLN GHLRTMRANY VPSLLISKVF GQIFSFINVQ LFNSLLLRRE CCSFSNGEYV KTGLAELEKW CHDATEEFVG SAWDELKHIR
1401: QAVGFLVIHQ KPKKSLKEIT TELCPVLSIQ QLYRISTMYW DDKYGTHSVS TEVIATMRAE VSDVSKSAIS NSFLLDDDSS IPFSLDDISK SMQNVEVAEV
1501: DPPPLIRQNS NFMFLLERSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)