AT1G14850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nucleoporin 155 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein similar to nucleoporin, a a major component of the nuclear pore complex (NPC) involved in cellular nucleo-cytoplasmic transport | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
nucleoporin 155 (NUP155); FUNCTIONS IN: nucleocytoplasmic transporter activity; INVOLVED IN: nucleocytoplasmic transport; LOCATED IN: nucleolus, plasma membrane, chloroplast, nuclear pore; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin, Nup133/Nup155-like, N-terminal (InterPro:IPR014908), Nucleoporin, Nup155-like (InterPro:IPR004870), Nucleoporin, Nup133/Nup155-like, C-terminal (InterPro:IPR007187); Has 459 Blast hits to 396 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 168; Plants - 85; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5116921..5123259 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 160023.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.14 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1464 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSQDDEIVMR DVTSAGICIG DRIGREAASQ LDLEEALEAS RYASHPYSTH PREWPPLIEV GETWELPSVL IERYNTAGGE GTALCGIFPE IRRAWASVDN 0101: SLFLWRFDKR DGQCPEYSGE EQAICAVGLA KCRPGVFVEA IQYLLVLATP VELVLVGVCC TEGPDGRDPY AEISVQPLPD YTISSDGVTM TCVTCTNKGR 0201: IFMAGRDGHI YELLYTTGSG WNKRCRKVCL TAGVGSMISR WVVPNVFKFG AVDPVVEMVV DNERQILYAR TEEMKLQAYV SGPNGEGPLK KVAEERNLLN 0301: QKDLSQGNRQ SAVAGRSNKP SIVSISPLSM LESKWLHLVA ALSDGRRMYL STSSSGSGST ISFSGFNNHR QTPNCLKVVS TRPSPPLGVG VGLGFGAASV 0401: AGRTQNDDLS MKIETAYYSV GTLVLSDSSP PAMSSLLVVS RDSSVHSQAG SSSGPSSRSS RALREVVSSL PIEGRMLFVA DVLPSPDTAA TIQSLYSELE 0501: YCGVEVSGES YEKACGKLWA RSDLSTQHIL PRRKIVVFTT MGMMELVFNR PVDILRRLLE SNSPRSLLED FFTRFGVGEA AAMCLMLAAR IINFEDLISN 0601: IVADKAAEAF EDPRIVGMPQ FDGSSGLSNT RTATGGFSMG QVVQEAEPIF SGAHEGLCLC TSRLLFPLWE LPVMSKKTSS DTMSEDGVVI CRLSTSAMHV 0701: LESKIRSLEK FLRSRRNQRR GLYGCVAGLG DVTGSILYGT GSELGATERN MVRNLFGAYS NGGESANKRQ RLPYSPAELA ATEVRAMECI RQLLLRSAEA 0801: LFLLQLLSQH HVARLVQELD ANLKQALVQL TFHQLVCSEE GDQIATRLIS AVMEYYTGSD GRGTVDDISP RLREGCPSYF KESDYKFYLA VERLERAALT 0901: SDAEEKENVA REAFSFLSKV PGSADLQTVC KRFEDLRFYE AVVCLPLQKA QALDPAGDAF NDQLDASIRE HALAQRKQCY EIIANALRSL ASPLASPTLD 1001: EASRSQYICQ IVHLGVQSTD RAFREYLYKA MIELHLENEL LEYGGPDLVP FLQNAGSHSE SQVGAVSTGS SPLGHSGTQI SSDQAKYFDL LAKYYVSKRQ 1101: HVLAAHVFLR LAERRAISLG DSPTLERRRD DLSQAVLQAK NASNSDGLVG SAQGVSDSGL LDLLEGKLAV LQFQIKIRDK LEAIASNFES SVAMQDSDQN 1201: GQVLDGDSSD DTNLANAANE MAMEVSSELK SVTQLYNEYA VPFELWEICL EMLYFANYSG DADSSIIRET WARLIDQALS QGGIREACAV LKRVGSHIYP 1301: GDGVVLPLDV LCLHLERAAL ERSERIENVR DEDIAKALLA ACKGAAEPVL NAYDRLLSNA AVVPSPNLRI RLLRSVLVVL REWAMSVLSD RMGSSPTRSS 1401: LILGGSFALE NKAALNQGAR DKIANAANRY MTEVRRLALP PNKTDGVYAG FKELDESLLS PFSF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)