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AT1G12000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.638
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phosphofructokinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phosphofructokinase family protein; FUNCTIONS IN: diphosphate-fructose-6-phosphate 1-phosphotransferase activity; INVOLVED IN: response to cadmium ion, glycolysis, photosynthesis; LOCATED IN: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: Phosphofructokinase family protein (TAIR:AT4G04040.1); Has 6357 Blast hits to 6276 proteins in 1942 species: Archae - 28; Bacteria - 4805; Metazoa - 61; Fungi - 134; Plants - 409; Viruses - 4; Other Eukaryotes - 916 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G12000-MONOMERBioGrid:22992EC:2.7.1.90eggNOG:COG0205eggNOG:KOG2440EMBL:AC002131EMBL:AY062473
EMBL:AY093260EMBL:CP002684EnsemblPlants:AT1G12000EnsemblPlants:AT1G12000.1entrez:837752Gene3D:1.10.10.480GeneID:837752
Genevisible:Q8W4M5GO:GO:0003872GO:GO:0005524GO:GO:0005618GO:GO:0005829GO:GO:0006002GO:GO:0009735
GO:GO:0015979GO:GO:0016020GO:GO:0046686GO:GO:0046835GO:GO:0046872GO:GO:0047334Gramene:AT1G12000.1
gramene_pathway:2.7.1.90gramene_pathway:PWY-1042HAMAP:MF_01980hmmpanther:PTHR13697hmmpanther:PTHR13697:SF26HOGENOM:HOG000017164InParanoid:Q8W4M5
InterPro:IPR000023InterPro:IPR011183InterPro:IPR013981InterPro:IPR022953iPTMnet:Q8W4M5KEGG:00010+2.7.1.11KEGG:00030+2.7.1.11
KEGG:00051+2.7.1.11KEGG:00052+2.7.1.11KEGG:00680+2.7.1.11KEGG:ath:AT1G12000KO:K00895OMA:IETPDQFPaxDb:Q8W4M5
Pfam:PF00365Pfam:Q8W4M5PhylomeDB:Q8W4M5PIR:A86255PIRSF:PIRSF005677PRIDE:Q8W4M5PRINTS:PR00476
PRO:PR:Q8W4M5ProteinModelPortal:Q8W4M5Proteomes:UP000006548RefSeq:NP_172664.1SMR:Q8W4M5STRING:3702.AT1G12000.1SUPFAM:SSF53784
TAIR:AT1G12000TIGRfam:TIGR02477TIGRFAMs:TIGR02477UniGene:At.21087UniPathway:UPA00109UniProt:Q8W4M5
Coordinates (TAIR10) chr1:-:4050159..4053727
Molecular Weight (calculated) 61463.00 Da
IEP (calculated) 5.95
GRAVY (calculated) -0.18
Length 566 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPALAVTRD LTAVGSPENA PAKGRASVYS EVQSSRINNT LPLPSVLKGA FKIVEGPASS AAGNPDEIAK LFPGLYGQPS VAVVPDQDAP SSAPKLKIGV
101: VLSGGQAPGG HNVISGLFDY LQERAKGSTF YGFKGGPAGI MKCKYVELNA EYIQPYRNQG GFDMICSGRD KIETPDQFKQ AEETAKKLDL DGLVVIGGDD
201: SNTNACLLAE NFRSKNLKTR VIGCPKTIDG DLKCKEVPTS FGFDTACKIY SEMIGNVMID ARSTGKYYHF VRLMGRAASH ITLECALQTH PNITIIGEEV
301: SAQKQTLKNV TDYMVDVICK RAELGYNYGV ILIPEGLIDF IPEVQELIAE LNEILANEVV DENGLWKKKL TEQSLKLFDL LPEAIQEQLM LERDPHGNVQ
401: VAKIETEKML IQMVETELEK RKQAGAYKGQ FMGQSHFFGY EGRCGLPTNF DATYCYALGY GAGVLLNSGK TGLISSVGNL AAPVEEWTVG GTALTALMDV
501: ERRHGKFKPV IKKAMVELEG APFKKFASLR EEWALKNRYI SPGPIQFTGP GSDSLSHTLL LELGAQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)