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AT1G10760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pyruvate phosphate dikinase, PEP/pyruvate binding domain
Curator
Summary (TAIR10)
Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.
Computational
Description (TAIR10)
STARCH EXCESS 1 (SEX1); FUNCTIONS IN: protein binding, alpha-glucan, water dikinase activity; INVOLVED IN: cold acclimation, response to symbiotic fungus, response to trehalose stimulus, circadian rhythm, starch catabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192); BEST Arabidopsis thaliana protein match is: phosphoglucan, water dikinase (TAIR:AT4G24450.1); Has 2623 Blast hits to 2596 proteins in 1116 species: Archae - 196; Bacteria - 1989; Metazoa - 24; Fungi - 8; Plants - 221; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G10760-MONOMERBioCyc:MetaCyc:AT1G10760-MONOMERBioGrid:22859CAZy:CBM45EC:2.7.9.4eggNOG:ENOG410IHGMeggNOG:ENOG410XUE8
EMBL:AC007354EMBL:AC009398EMBL:AF312027EMBL:AF372893EMBL:AY052349EMBL:AY057722EMBL:CP002684
EnsemblPlants:AT1G10760EnsemblPlants:AT1G10760.1entrez:837619Gene3D:3.30.1490.20Gene3D:3.30.470.20GeneID:837619Genevisible:Q9SAC6
GO:GO:0005524GO:GO:0005739GO:GO:0005983GO:GO:0009507GO:GO:0009570GO:GO:0009610GO:GO:0009631
GO:GO:0009941GO:GO:0046872GO:GO:0050521Gramene:AT1G10760.1hmmpanther:PTHR22931hmmpanther:PTHR22931:SF1HOGENOM:HOG000265165
InParanoid:Q9SAC6IntAct:Q9SAC6InterPro:IPR002192InterPro:IPR013815InterPro:IPR013816iPTMnet:Q9SAC6KEGG:ath:AT1G10760
KO:K08244MINT:MINT-8331304OMA:CLKGWNQPaxDb:Q9SAC6Pfam:PF01326Pfam:Q9SAC6PhylomeDB:Q9SAC6
PIR:B86241PRIDE:Q9SAC6PRO:PR:Q9SAC6ProteinModelPortal:Q9SAC6Proteomes:UP000006548RefSeq:NP_563877.1STRING:3702.AT1G10760.1
SUPFAM:SSF56059TAIR:AT1G10760tair10-symbols:GWDtair10-symbols:GWD1tair10-symbols:SEX1tair10-symbols:SOPtair10-symbols:SOP1
UniGene:At.22136UniProt:Q9SAC6
Coordinates (TAIR10) chr1:-:3581210..3590043
Molecular Weight (calculated) 156590.00 Da
IEP (calculated) 5.69
GRAVY (calculated) -0.41
Length 1399 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSNSVVHNLL NRGLIRPLNF EHQNKLNSSV YQTSTANPAL GKIGRSKLYG KGLKQAGRSL VTETGGRPLS FVPRAVLAMD PQAAEKFSLD GNIDLLVEVT
0101: STTVREVNIQ IAYTSDTLFL HWGAILDNKE NWVLPSRSPD RTQNFKNSAL RTPFVKSGGN SHLKLEIDDP AIHAIEFLIF DESRNKWYKN NGQNFHINLP
0201: TERNVKQNVS VPEDLVQIQA YLRWERKGKQ MYNPEKEKEE YEAARTELRE EMMRGASVED LRAKLLKKDN SNESPKSNGT SSSGREEKKK VSKQPERKKN
0301: YNTDKIQRKG RDLTKLIYKH VADFVEPESK SSSEPRSLTT LEIYAKAKEE QETTPVFSKK TFKLEGSAIL VFVTKLSGKT KIHVATDFKE PVTLHWALSQ
0401: KGGEWLDPPS DILPPNSLPV RGAVDTKLTI TSTDLPSPVQ TFELEIEGDS YKGMPFVLNA GERWIKNNDS DFYVDFAKEE KHVQKDYGDG KGTAKHLLDK
0501: IADLESEAQK SFMHRFNIAA DLVDEAKSAG QLGFAGILVW MRFMATRQLV WNKNYNVKPR EISKAQDRLT DLLQDVYASY PEYRELLRMI MSTVGRGGEG
0601: DVGQRIRDEI LVIQRKNDCK GGIMEEWHQK LHNNTSPDDV VICQALMDYI KSDFDLSVYW KTLNDNGITK ERLLSYDRAI HSEPNFRGEQ KDGLLRDLGH
0701: YMRTLKAVHS GADLESAIQN CMGYQDDGEG FMVGVQINPV SGLPSGYPDL LRFVLEHVEE KNVEPLLEGL LEARQELRPL LLKSHDRLKD LLFLDLALDS
0801: TVRTAIERGY EQLNDAGPEK IMYFISLVLE NLALSSDDNE DLIYCLKGWQ FALDMCKSKK DHWALYAKSV LDRSRLALAS KAERYLEILQ PSAEYLGSCL
0901: GVDQSAVSIF TEEIIRAGSA AALSSLVNRL DPVLRKTANL GSWQVISPVE VVGYVIVVDE LLTVQNKTYD RPTIIVANRV RGEEEIPDGA VAVLTPDMPD
1001: VLSHVSVRAR NGKICFATCF DSGILSDLQG KDGKLLSLQP TSADVVYKEV NDSELSSPSS DNLEDAPPSI SLVKKQFAGR YAISSEEFTS DLVGAKSRNI
1101: GYLKGKVPSW VGIPTSVALP FGVFEKVISE KANQAVNDKL LVLKKTLDEG DQGALKEIRQ TLLGLVAPPE LVEELKSTMK SSDMPWPGDE GEQRWEQAWA
1201: AIKKVWASKW NERAYFSTRK VKLDHDYLCM AVLVQEVINA DYAFVIHTTN PSSGDSSEIY AEVVKGLGET LVGAYPGRSL SFICKKNNLD SPLVLGYPSK
1301: PIGLFIRRSI IFRSDSNGED LEGYAGAGLY DSVPMDEEDQ VVLDYTTDPL ITDLSFQKKV LSDIARAGDA IEKLYGTAQD IEGVIRDGKL YVVQTRPQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)