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AT1G09620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.989
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, leucine-tRNA ligase activity, ATP binding; INVOLVED IN: leucyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic (InterPro:IPR004493); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I, L, M and V) family protein (TAIR:AT4G04350.1); Has 16931 Blast hits to 15894 proteins in 2953 species: Archae - 757; Bacteria - 11010; Metazoa - 639; Fungi - 488; Plants - 264; Viruses - 0; Other Eukaryotes - 3773 (source: NCBI BLink).
Protein Annotations
EC:6.1.1.4eggNOG:COG0495eggNOG:KOG0437EMBL:AC000132EMBL:AC003970EMBL:AK222125EMBL:CP002684
EnsemblPlants:AT1G09620EnsemblPlants:AT1G09620.1entrez:837489Gene3D:1.10.730.10Gene3D:3.40.50.620Gene3D:3.90.740.10GeneID:837489
Genevisible:F4I116GO:GO:0002161GO:GO:0004823GO:GO:0005524GO:GO:0005829GO:GO:0006429GO:GO:0009506
GO:GO:0009507Gramene:AT1G09620.1gramene_pathway:6.1.1.4gramene_pathway:TRNA-CHARGING-PWYhmmpanther:PTHR11946hmmpanther:PTHR11946:SF51InParanoid:F4I116
InterPro:IPR001412InterPro:IPR002300InterPro:IPR004493InterPro:IPR009008InterPro:IPR009080InterPro:IPR013155InterPro:IPR014729
KEGG:ath:AT1G09620KO:K01869OMA:TADDWKYPaxDb:F4I116Pfam:PF00133Pfam:PF08264PRIDE:F4I116
PRO:PR:F4I116ProMEX:F4I116PROSITE:PS00178ProteinModelPortal:F4I116Proteomes:UP000006548RefSeq:NP_172433.2scanprosite:PS00178
SMR:F4I116STRING:3702.AT1G09620.1SUPFAM:SSF47323SUPFAM:SSF50677SUPFAM:SSF52374TAIR:AT1G09620TIGRfam:TIGR00395
TIGRFAMs:TIGR00395UniGene:At.10219UniGene:At.66929UniProt:F4I116
Coordinates (TAIR10) chr1:-:3113077..3116455
Molecular Weight (calculated) 123458.00 Da
IEP (calculated) 5.85
GRAVY (calculated) -0.33
Length 1091 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASESKSYAR RDRLLEIEAT VRKWWEDEDV FRAESCENLP KPGEKFFSTF PFPYMNGYLH IGHAFSLSKV DFASAYHRLR GANVLLPFGF HCTGMPIKAS
0101: ADKLRREIEQ FGNPPVFTAE DTTKVPEVQE ESSDTIALPI PGQFKGKKSK VAAKAGGQVY QWEIMRSFGL TDSEIANFRE PSEWLYYFPP LAVEDLRAYG
0201: LGCDWRRSFV TTDVNPFFDA FVRWQMRKLK SMGKIVKDRR YTIFSPLDGQ PCADHDRATG EGVQPQEYTL IKMEVVKPFP LKLGPLEGKR VFLAAATLRP
0301: ETMYGQTNAW VLPDGKYGAY EISETEVFIL TERAALNLAY QNFSKNPQEP SCLVELTGYD LIGLPLRSPL SVNEIIYALP MLTILTNKGT GIVTSVPSDA
0401: PDDYMALQDL IKKPALQDKY GVKTEWLPTE IIPIINIPEF GDKAAEKVCL DLKIKSQNDK EKLAEAKRLT YLKGFTEGTM LIGEFFGRKV QEIKPIIKTK
0501: LIETGEAIIY SEPEKPVMSR SGDECVVALT DQWYITYGES EWRKIAEECL SKMNLYSDET RHGFEHTLSW LNQWACSRSF GLGTRIPWDE QFLVESLSDS
0601: SLYMAYYTVA HIFHDGDMYK GSKSLIRPQQ MNDEVWEYLF CDGPYPKSSD IPSAVLSEMK QEFDYWYPLD LRVSGKDLIQ NHLTFFIYNH TALMANRNWP
0701: RGIRCNGHIM LNSEKMSKST GNFRTLRQSI EEFSATGTRF CLADAGDGVD DANFAFETAN AAILRLTKEL TWMEEVLDVE SSLRTGPPST YADKVFENDM
0801: NIALRLTERA YKDCLFREAL KNGFYDLQAA RDEYRLSCGT GGMHHDLLLK FMDVQTRLIV PICPHFADYV WRKVLNKEGC VLTAGWPPSN EPDLVLKSAN
0901: KYLQDSIVLM RKLLQKQLSG SKKGAKKGAQ VTAVPEGKLK GLVYVNEQFD GWRAHCLRIL QSRFDQQTCS FPPDTEMLAE LSATLLQEGK NLKAIQKVCM
1001: PFLKFKKDEA ISIGTQALNL RLPFGEIEVL QSNKDLIRRQ LGLEEVEIYS ASDPDDVSIA GPHASLLTQN PPSPGSPTAI FVTSTSVCPP S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)