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AT1G09310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function, DUF538
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT1G56580.1); Has 409 Blast hits to 409 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 403; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYCAeggNOG:ENOG4111URZEMBL:AC006416EMBL:AF348589EMBL:AY045914EMBL:AY079406EMBL:AY084527
EMBL:CP002684EnsemblPlants:AT1G09310EnsemblPlants:AT1G09310.1entrez:837452Gene3D:2.30.240.10GeneID:837452GO:GO:0048046
Gramene:AT1G09310.1hmmpanther:PTHR31676hmmpanther:PTHR31676:SF10HOGENOM:HOG000237639IntAct:Q9ZPZ4InterPro:IPR007493KEGG:ath:AT1G09310
OMA:LIWVTINPfam:PF04398PhylomeDB:Q9ZPZ4PIR:B86226Proteomes:UP000006548RefSeq:NP_563841.1STRING:3702.AT1G09310.1
SUPFAM:0051283SUPFAM:SSF141562TAIR:AT1G09310UniGene:At.23432UniGene:At.71681UniProt:Q9ZPZ4
Coordinates (TAIR10) chr1:+:3009109..3009648
Molecular Weight (calculated) 19948.10 Da
IEP (calculated) 5.06
GRAVY (calculated) -0.37
Length 179 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLVTEEVRA KAEMYTGDEI CREKTKCFLK EISMPNGLLP LKDIEEVGYD RESGVVWLKQ KKSITHKFTE IDKLVSYGTE VTAIVETGKI KKLTGVKAKE
101: LLIWVTINEI YTEEPPTKIT FKTPTTLSRT FPVTAFIVPE EPAKEEPAKE EPAKEKSSEA TEAKEAVAIK EAVAVKEAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)