suba logo
AT1G09200.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24727099 (2014): mitochondrion
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Histone superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1); Has 14599 Blast hits to 14591 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10602; Fungi - 2038; Plants - 1256; Viruses - 0; Other Eukaryotes - 703 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2036eggNOG:KOG1745EMBL:AK227612EMBL:AK227656EMBL:AK228405EnsemblPlants:AT1G09200EnsemblPlants:AT1G09200.1
EnsemblPlants:AT3G27360.1EnsemblPlants:AT5G10390.1EnsemblPlants:AT5G10400.1EnsemblPlants:AT5G65360.1entrez:822357entrez:830903entrez:830904
entrez:836661entrez:837440ExpressionAtlas:Q0WRA9Gene3D:1.10.20.10GeneID:822357GeneID:830903GeneID:830904
GeneID:836661GeneID:837440GO:GO:0000786GO:GO:0003677GO:GO:0005634Gramene:AT1G09200.1Gramene:AT3G27360.1
Gramene:AT5G10390.1Gramene:AT5G10400.1Gramene:AT5G65360.1InterPro:IPR000164InterPro:IPR007125InterPro:IPR009072KEGG:ath:AT1G09200
KEGG:ath:AT3G27360KEGG:ath:AT5G10390KEGG:ath:AT5G10400KEGG:ath:AT5G65360KO:K11253OMA:SSATHQKPfam:P59226
Pfam:PF00125PhylomeDB:Q0WRA9PRINTS:PR00622PROSITE:PS00322PROSITE:PS00959RefSeq:NP_189372.1RefSeq:NP_201339.1
RefSeq:NP_563838.1RefSeq:NP_568227.1RefSeq:NP_568228.1scanprosite:PS00322scanprosite:PS00959SMART:SM00428SMR:Q0WRA9
STRING:3702.AT5G65360.1SUPFAM:SSF47113TAIR:AT1G09200TAIR:AT3G27360TAIR:AT5G10390TAIR:AT5G10400TAIR:AT5G65360
UniGene:At.17610UniGene:At.1824UniGene:At.20804UniGene:At.21310UniGene:At.21486UniGene:At.22540UniGene:At.32384
UniGene:At.63772UniGene:At.71559UniGene:At.73076UniProt:P59226UniProt:Q0WRA9
Coordinates (TAIR10) chr1:-:2971722..2972132
Molecular Weight (calculated) 15268.80 Da
IEP (calculated) 11.86
GRAVY (calculated) -0.55
Length 136 amino acids
Sequence (TAIR10)
(BLAST)
001: MARTKQTARK STGGKAPRKQ LATKAARKSA PATGGVKKPH RFRPGTVALR EIRKYQKSTE LLIRKLPFQR LVREIAQDFK TDLRFQSSAV AALQEAAEAY
101: LVGLFEDTNL CAIHAKRVTI MPKDIQLARR IRGERA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)