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AT1G07920.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15496452 (2005): nucleus
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:14505352 (2003): nucleus
FP Images

Arabidopsis cell culture (peroxisomal marker)

At1g-GFP-07920
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel

onion epidermal cell layer (peroxisomal marker)

At1g-GFP-07920
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : GTP binding Elongation factor Tu family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, nucleolus, plasma membrane, chloroplast, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 84282 Blast hits to 84186 proteins in 18729 species: Archae - 1011; Bacteria - 33710; Metazoa - 21823; Fungi - 13003; Plants - 1919; Viruses - 6; Other Eukaryotes - 12810 (source: NCBI BLink).
Protein Annotations
BioGrid:21405BioGrid:22548BioGrid:22549BioGrid:22550eggNOG:COG5256eggNOG:KOG0052EMBL:AC026875
EMBL:AY039583EMBL:BT000595EMBL:CP002684EMBL:U63815EMBL:X16430EnsemblPlants:AT1G07920EnsemblPlants:AT1G07920.1
EnsemblPlants:AT1G07930.1EnsemblPlants:AT1G07940.1EnsemblPlants:AT1G07940.2EnsemblPlants:AT5G60390.1EnsemblPlants:AT5G60390.3entrez:836161entrez:837307
entrez:837308entrez:837309ExpressionAtlas:P0DH99Gene3D:3.40.50.300GeneID:836161GeneID:837307GeneID:837308
GeneID:837309Genevisible:P0DH99GO:GO:0003746GO:GO:0003924GO:GO:0005525GO:GO:0005739GO:GO:0005886
GO:GO:0009506Gramene:AT1G07920.1Gramene:AT1G07930.1Gramene:AT1G07940.1Gramene:AT1G07940.2Gramene:AT5G60390.1Gramene:AT5G60390.3
HAMAP:MF_00118_Ahmmpanther:PTHR23115hmmpanther:PTHR23115:SF157InParanoid:P0DH99InterPro:IPR000795InterPro:IPR004160InterPro:IPR004161
InterPro:IPR004539InterPro:IPR009000InterPro:IPR009001InterPro:IPR027417InterPro:IPR031157iPTMnet:P0DH99KEGG:ath:AT1G07920
KEGG:ath:AT1G07940KO:K03231PaxDb:P0DH99Pfam:P0DH99Pfam:PF00009Pfam:PF03143Pfam:PF03144
Pfam:Q0WL56Pfam:Q8GTY0Pfam:Q8W4H7Pfscan:PS51722PhylomeDB:P0DH99PIR:S06724PRIDE:P0DH99
PRINTS:PR00315PRO:PR:P0DH99PROSITE:PS00301PROSITE:PS51722ProteinModelPortal:P0DH99Proteomes:UP000006548Reactome:R-ATH-156842
Reactome:R-ATH-3371511RefSeq:NP_001030993.1RefSeq:NP_001119464.1RefSeq:NP_200847.1RefSeq:NP_563799.1RefSeq:NP_563800.1RefSeq:NP_563801.1
scanprosite:PS00301SMR:P0DH99STRING:3702.AT5G60390.1SUPFAM:SSF50447SUPFAM:SSF50465SUPFAM:SSF52540TAIR:AT1G07940
TIGRfam:TIGR00483TIGRFAMs:TIGR00483UniGene:At.21276UniGene:At.21565UniGene:At.23693UniGene:At.24260UniGene:At.25100
UniGene:At.26260UniGene:At.48167UniGene:At.65864UniGene:At.67247UniGene:At.68737UniGene:At.69737UniGene:At.71523
UniGene:At.75210UniProt:P0DH99UniProt:Q0WL56UniProt:Q8GTY0UniProt:Q8W4H7
Coordinates (TAIR10) chr1:+:2455559..2457001
Molecular Weight (calculated) 49505.10 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.33
Length 449 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)