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AT1G07660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24727099 (2014): mitochondrion
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Histone superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59690.1); Has 3178 Blast hits to 3178 proteins in 446 species: Archae - 0; Bacteria - 0; Metazoa - 1790; Fungi - 358; Plants - 490; Viruses - 6; Other Eukaryotes - 534 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2036eggNOG:KOG3467EMBL:AK175513EMBL:AK175843EMBL:AK176147EMBL:AK228230EMBL:AK229241
EMBL:AK317074EMBL:BT003931EMBL:BT004744EMBL:BT004970EMBL:BT024546EnsemblPlants:AT1G07660EnsemblPlants:AT1G07660.1
EnsemblPlants:AT1G07820.1EnsemblPlants:AT1G07820.2EnsemblPlants:AT2G28740.1EnsemblPlants:AT3G45930.1EnsemblPlants:AT3G46320.1EnsemblPlants:AT3G53730.1EnsemblPlants:AT5G59690.1
EnsemblPlants:AT5G59970.1entrez:817423entrez:823736entrez:823777entrez:824540entrez:836090entrez:836119
entrez:837279entrez:837297ExpressionAtlas:Q6NR90Gene3D:1.10.20.10GeneID:817423GeneID:823736GeneID:823777
GeneID:824540GeneID:836090GeneID:836119GeneID:837279GeneID:837297GO:GO:0000786GO:GO:0003677
GO:GO:0005634GO:GO:0006334Gramene:AT1G07660.1Gramene:AT1G07820.1Gramene:AT1G07820.2Gramene:AT2G28740.1Gramene:AT3G45930.1
Gramene:AT3G46320.1Gramene:AT3G53730.1Gramene:AT5G59690.1Gramene:AT5G59970.1hmmpanther:PTHR10484InterPro:IPR001951InterPro:IPR009072
InterPro:IPR019809KEGG:ath:AT1G07820KEGG:ath:AT2G28740KEGG:ath:AT3G45930KEGG:ath:AT3G46320KEGG:ath:AT3G53730KEGG:ath:AT5G59690
KEGG:ath:AT5G59970KO:K11254OMA:STHNERIPfam:P59259Pfam:PF15511PhylomeDB:Q6NR90PRINTS:PR00623
PROSITE:PS00047RefSeq:NP_180441.1RefSeq:NP_190179.1RefSeq:NP_190941.1RefSeq:NP_563793.1RefSeq:NP_563797.1RefSeq:NP_568911.1
RefSeq:NP_568918.1RefSeq:NP_850660.1RefSeq:NP_850939.1scanprosite:PS00047SMART:SM00417SMR:Q6NR90STRING:3702.AT5G59970.1
SUPFAM:SSF47113TAIR:AT1G07660TAIR:AT1G07820TAIR:AT2G28740TAIR:AT3G45930TAIR:AT3G46320TAIR:AT3G53730
TAIR:AT5G59690TAIR:AT5G59970UniGene:At.25388UniGene:At.27255UniGene:At.27457UniGene:At.43267UniGene:At.48166
UniGene:At.49195UniGene:At.66138UniGene:At.68113UniGene:At.71937UniGene:At.71990UniGene:At.72015UniGene:At.75642
UniGene:At.75657UniProt:P59259UniProt:Q6NR90
Coordinates (TAIR10) chr1:+:2369212..2369523
Molecular Weight (calculated) 11410.20 Da
IEP (calculated) 12.01
GRAVY (calculated) -0.52
Length 103 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGRGKGGKG LGKGGAKRHR KVLRDNIQGI TKPAIRRLAR RGGVKRISGL IYEETRGVLK IFLENVIRDA VTYTEHARRK TVTAMDVVYA LKRQGRTLYG
101: FGG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)