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AT1G07140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.808
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:20061580 (2010): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pleckstrin homology (PH) domain superfamily protein
Curator
Summary (TAIR10)
Encodes a putative Ran-binding protein (siRanBP).
Computational
Description (TAIR10)
SIRANBP; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: intracellular transport, protein import into nucleus, translocation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) domain superfamily protein (TAIR:AT2G30060.1); Has 2132 Blast hits to 1580 proteins in 275 species: Archae - 9; Bacteria - 76; Metazoa - 1014; Fungi - 369; Plants - 163; Viruses - 39; Other Eukaryotes - 462 (source: NCBI BLink).
Protein Annotations
BioGrid:22466eggNOG:COG5171eggNOG:KOG0864EMBL:AC067971EMBL:AF057024EMBL:AF370491EMBL:AF410294
EMBL:AY097364EMBL:BT002193EMBL:CP002684EMBL:X97377EnsemblPlants:AT1G07140EnsemblPlants:AT1G07140.1entrez:837225
Gene3D:2.30.29.30GeneID:837225Genevisible:Q9LMK7GO:GO:0005643GO:GO:0015031GO:GO:0046907GO:GO:0051028
Gramene:AT1G07140.1hmmpanther:PTHR23138hmmpanther:PTHR23138:SF93HOGENOM:HOG000176323InParanoid:Q9LMK7IntAct:Q9LMK7InterPro:IPR000156
InterPro:IPR011993iPTMnet:Q9LMK7KEGG:ath:AT1G07140KO:K15306ncoils:CoilOMA:ECKEIMRPaxDb:Q9LMK7
Pfam:PF00638Pfam:Q9LMK7Pfscan:PS50196PhylomeDB:Q9LMK7PIR:D86206PRIDE:Q9LMK7PRO:PR:Q9LMK7
PROSITE:PS50196ProteinModelPortal:Q9LMK7Proteomes:UP000006548RefSeq:NP_172194.1SMART:SM00160SMR:Q9LMK7STRING:3702.AT1G07140.1
SUPFAM:SSF50729TAIR:AT1G07140tair10-symbols:SIRANBPUniGene:At.22610UniGene:At.23647UniGene:At.74721UniProt:Q9LMK7
Coordinates (TAIR10) chr1:-:2192360..2193688
Molecular Weight (calculated) 25602.60 Da
IEP (calculated) 4.61
GRAVY (calculated) -0.98
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MATNEPEHEH RDEEEAGANE DEDTGAQVAP IVRLEEVAVT TGEEDEDAVL DLKSKLYRFD KDANQWKERG AGTVKFLKHK NTGKIRLVMR QSKTLKICAN
101: HFVKSGMSVQ EHVGNEKSCV WHARDFADGE LKDELFCIRF ASIENCKTFM QKFKEVAESE EEKEESKDAA DTAGLLEKLT VEETKTEEKT EAKAVETAKT
201: EVKAEEKKES EAEKSGEAKK TEESGPST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)